miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13313 5' -52.8 NC_003409.1 + 6403 0.66 0.971709
Target:  5'- uGCCauGGACGGCcGAGGGuGuGGCCUcggUCa -3'
miRNA:   3'- -CGGcuUUUGCCGuCUUUC-C-CCGGA---AG- -5'
13313 5' -52.8 NC_003409.1 + 126673 0.66 0.971418
Target:  5'- -gCGAGggUGGCGGAcgcauAGGuguugaagagucuGGCCUUCc -3'
miRNA:   3'- cgGCUUuuGCCGUCUu----UCC-------------CCGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 34905 0.66 0.971418
Target:  5'- aCCGAAGAUggacagaGGCGGGAAGauucuGGGCCc-- -3'
miRNA:   3'- cGGCUUUUG-------CCGUCUUUC-----CCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 31667 0.66 0.968702
Target:  5'- gGCCu-AAugGGguGu-GGGGGCCa-- -3'
miRNA:   3'- -CGGcuUUugCCguCuuUCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 128806 0.66 0.965473
Target:  5'- gGCCGcGGGAaGGUcauGGGccAAGGGGCCUUg -3'
miRNA:   3'- -CGGC-UUUUgCCG---UCU--UUCCCCGGAAg -5'
13313 5' -52.8 NC_003409.1 + 106721 0.66 0.965473
Target:  5'- cGCCGuuuGGAuCGGUAauguucuuAAGGaGGCCUUCg -3'
miRNA:   3'- -CGGCu--UUU-GCCGUcu------UUCC-CCGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 126887 0.66 0.965473
Target:  5'- -gCGGGAGCGGguGAAGgaauGGGaGCCa-- -3'
miRNA:   3'- cgGCUUUUGCCguCUUU----CCC-CGGaag -5'
13313 5' -52.8 NC_003409.1 + 132780 0.66 0.962018
Target:  5'- cCCGAGGAUGuu-GAcuGGGGCCUUUu -3'
miRNA:   3'- cGGCUUUUGCcguCUuuCCCCGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 33741 0.66 0.961659
Target:  5'- aCCGGAuccaAACGcccccauGCuGAAAGGGGCCa-- -3'
miRNA:   3'- cGGCUU----UUGC-------CGuCUUUCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 76412 0.66 0.958329
Target:  5'- cGCaGAAAACGGCAGAAauAGuGGuGCUa-- -3'
miRNA:   3'- -CGgCUUUUGCCGUCUU--UC-CC-CGGaag -5'
13313 5' -52.8 NC_003409.1 + 72427 0.67 0.954402
Target:  5'- gGuuGA--ACaGguGAucuuuAAGGGGCCUUCu -3'
miRNA:   3'- -CggCUuuUGcCguCU-----UUCCCCGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 20795 0.67 0.950232
Target:  5'- gGCCGGGcGCGGCcuggcgcacagaAGGGAGGGGgaUUUg -3'
miRNA:   3'- -CGGCUUuUGCCG------------UCUUUCCCCggAAG- -5'
13313 5' -52.8 NC_003409.1 + 133650 0.67 0.945816
Target:  5'- cCUGuuuccAGGCGGaCAGAcacAGGGGGCCcUCa -3'
miRNA:   3'- cGGCu----UUUGCC-GUCU---UUCCCCGGaAG- -5'
13313 5' -52.8 NC_003409.1 + 84544 0.67 0.945816
Target:  5'- uGCCaucuuguacGACGGCAGAGggucAGGaGGCCgUCa -3'
miRNA:   3'- -CGGcuu------UUGCCGUCUU----UCC-CCGGaAG- -5'
13313 5' -52.8 NC_003409.1 + 107697 0.67 0.941149
Target:  5'- cGCUGGAcccACGGCcgccGGAAGGGGCg--- -3'
miRNA:   3'- -CGGCUUu--UGCCGu---CUUUCCCCGgaag -5'
13313 5' -52.8 NC_003409.1 + 24015 0.67 0.93623
Target:  5'- uCUGGGugguuuCGGUAGAuGGGGGCCg-- -3'
miRNA:   3'- cGGCUUuu----GCCGUCUuUCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 101143 0.67 0.93623
Target:  5'- gGCCuGAGugGG-GGAGGcGGGaGCCUUCa -3'
miRNA:   3'- -CGGcUUUugCCgUCUUU-CCC-CGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 36573 0.67 0.935724
Target:  5'- cGCCGAGucguuGCGGCGGGucagggcGAGGGGa---- -3'
miRNA:   3'- -CGGCUUu----UGCCGUCU-------UUCCCCggaag -5'
13313 5' -52.8 NC_003409.1 + 94331 0.68 0.925629
Target:  5'- cCCGAcAAcCGGCuGggGGGGGCg--- -3'
miRNA:   3'- cGGCUuUU-GCCGuCuuUCCCCGgaag -5'
13313 5' -52.8 NC_003409.1 + 118870 0.68 0.919945
Target:  5'- gGCUGGAGugGCGGUGGGc-GGGGCCc-- -3'
miRNA:   3'- -CGGCUUU--UGCCGUCUuuCCCCGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.