Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13327 | 5' | -64 | NC_003409.1 | + | 45734 | 0.7 | 0.283185 |
|
Target: 5'- uUGuCAGGCCaccCCGGGCGCcauuaGCGCCa -3' miRNA: 3'- cAC-GUCCGGau-GGCCCGUGc----CGCGGc -5' |
|||||||
| 13327 | 5' | -64 | NC_003409.1 | + | 100425 | 0.71 | 0.264573 |
|
Target: 5'- cGUuUAGGCCUGCCGGuuccCGGCGCUGg -3' miRNA: 3'- -CAcGUCCGGAUGGCCcgu-GCCGCGGC- -5' |
|||||||
| 13327 | 5' | -64 | NC_003409.1 | + | 102714 | 0.73 | 0.204735 |
|
Target: 5'- -cGcCAGGUUUGCC-GGUACGGCGCCu -3' miRNA: 3'- caC-GUCCGGAUGGcCCGUGCCGCGGc -5' |
|||||||
| 13327 | 5' | -64 | NC_003409.1 | + | 5208 | 0.75 | 0.149461 |
|
Target: 5'- -aGUaaaGGGUCagaaaaACCGGGCACGGCGCCu -3' miRNA: 3'- caCG---UCCGGa-----UGGCCCGUGCCGCGGc -5' |
|||||||
| 13327 | 5' | -64 | NC_003409.1 | + | 133027 | 0.75 | 0.132075 |
|
Target: 5'- gGUGguGGCagagUCGGGCGCGGUGCCu -3' miRNA: 3'- -CACguCCGgau-GGCCCGUGCCGCGGc -5' |
|||||||
| 13327 | 5' | -64 | NC_003409.1 | + | 88099 | 1.07 | 0.000697 |
|
Target: 5'- gGUGCAGGCCUACCGGGCACGGCGCCGc -3' miRNA: 3'- -CACGUCCGGAUGGCCCGUGCCGCGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home