miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 3' -57 NC_003409.1 + 133539 0.78 0.229177
Target:  5'- aCAGCAGGccgagauGCUGCAGgAGCGGGAGUCc -3'
miRNA:   3'- -GUCGUCCu------CGGUGUUgUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 132962 0.66 0.803445
Target:  5'- -cGCGGGAuCCGCAgGCAGguGGGuGCg -3'
miRNA:   3'- guCGUCCUcGGUGU-UGUCguCCU-CGg -5'
13345 3' -57 NC_003409.1 + 131523 0.68 0.6967
Target:  5'- cCAGUGGGuguGCCAC-GCAGCGGuAGUCc -3'
miRNA:   3'- -GUCGUCCu--CGGUGuUGUCGUCcUCGG- -5'
13345 3' -57 NC_003409.1 + 130947 0.69 0.665887
Target:  5'- --cCAGG-GCCAcCAGCAGCuGGaAGCCc -3'
miRNA:   3'- gucGUCCuCGGU-GUUGUCGuCC-UCGG- -5'
13345 3' -57 NC_003409.1 + 128260 0.66 0.836473
Target:  5'- uCAGCAcGGGGCgugauggCGCAggugaggGCAGCA-GAGCCc -3'
miRNA:   3'- -GUCGU-CCUCG-------GUGU-------UGUCGUcCUCGG- -5'
13345 3' -57 NC_003409.1 + 126001 0.72 0.502547
Target:  5'- gAGCAuccaaAGUUcacaACAGCAGCAGGAGCCa -3'
miRNA:   3'- gUCGUcc---UCGG----UGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125965 1.12 0.001007
Target:  5'- aCAGCAGGAGCCACAGCAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125935 0.85 0.080823
Target:  5'- gCAGCAGGAGCCcCu---GCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGuGuuguCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125908 1.12 0.001007
Target:  5'- aCAGCAGGAGCCACAGCAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125878 0.85 0.080823
Target:  5'- gCAGCAGGAGCCcCu---GCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGuGuuguCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125851 1.11 0.001298
Target:  5'- aCAGCAGGAGCCACAGCAGCAGGAGCCc -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125809 1.12 0.001007
Target:  5'- aCAGCAGGAGCCACAACAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125779 1.12 0.001096
Target:  5'- gCAGCAGGAGCCACAGCAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125749 1.12 0.001096
Target:  5'- gCAGCAGGAGCCACAGCAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125719 1.12 0.001096
Target:  5'- gCAGCAGGAGCCACAGCAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125689 1.12 0.001096
Target:  5'- gCAGCAGGAGCCACAGCAGCAGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125659 1.08 0.002095
Target:  5'- gCAGCGGGAGCCACAGCAGCGGGAGCCc -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125629 1.09 0.001626
Target:  5'- gCAGCGGGAGCCACAGCAGCGGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125599 1.09 0.001626
Target:  5'- gCAGCGGGAGCCACAGCAGCGGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 125569 1.09 0.001626
Target:  5'- gCAGCGGGAGCCACAGCAGCGGGAGCCa -3'
miRNA:   3'- -GUCGUCCUCGGUGUUGUCGUCCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.