miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 5' -60.4 NC_003409.1 + 133703 0.69 0.478392
Target:  5'- --cGCCAgCGGUAGCAGGucuGCCCCc-- -3'
miRNA:   3'- ccuCGGU-GUCGUCGUCCu--CGGGGacg -5'
13345 5' -60.4 NC_003409.1 + 133528 0.71 0.398529
Target:  5'- aGAuGCUGCAGgAGCGGGAGUCCCc-- -3'
miRNA:   3'- cCU-CGGUGUCgUCGUCCUCGGGGacg -5'
13345 5' -60.4 NC_003409.1 + 131528 0.72 0.335121
Target:  5'- gGGuguGCCAC-GCAGCGGuAGUCCCUGg -3'
miRNA:   3'- -CCu--CGGUGuCGUCGUCcUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 130949 0.72 0.35801
Target:  5'- aGGGCCAcCAGCAGCuGGAaGCCCaccucGCc -3'
miRNA:   3'- cCUCGGU-GUCGUCGuCCU-CGGGga---CG- -5'
13345 5' -60.4 NC_003409.1 + 128238 0.67 0.605413
Target:  5'- -aGGUgAgGGCAGCA-GAGCCCC-GCa -3'
miRNA:   3'- ccUCGgUgUCGUCGUcCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125975 0.83 0.061175
Target:  5'- aGGAGCCACAaCAGCAGGAGCCaCaGCa -3'
miRNA:   3'- -CCUCGGUGUcGUCGUCCUCGGgGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125945 1.13 0.000427
Target:  5'- aGGAGCCACAGCAGCAGGAGCCCCUGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 125918 0.83 0.061175
Target:  5'- aGGAGCCACAaCAGCAGGAGCCaCaGCa -3'
miRNA:   3'- -CCUCGGUGUcGUCGUCCUCGGgGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125888 1.13 0.000427
Target:  5'- aGGAGCCACAGCAGCAGGAGCCCCUGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 125846 1.13 0.000427
Target:  5'- aGGAGCCACAGCAGCAGGAGCCCCUGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 125819 0.8 0.09829
Target:  5'- aGGAGCCACAaCAGCAGGAGCCacaaCaGCn -3'
miRNA:   3'- -CCUCGGUGUcGUCGUCCUCGGg---GaCG- -5'
13345 5' -60.4 NC_003409.1 + 125789 0.94 0.010261
Target:  5'- aGGAGCCACAGCAGCAGGAGCCaCaGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125766 0.67 0.615493
Target:  5'- --uGCUGuugUGGCuccuGCAGGGGCUCCUGCu -3'
miRNA:   3'- ccuCGGU---GUCGu---CGUCCUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 125759 0.94 0.010261
Target:  5'- aGGAGCCACAGCAGCAGGAGCCaCaGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125729 0.94 0.010261
Target:  5'- aGGAGCCACAGCAGCAGGAGCCaCaGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125699 0.94 0.010261
Target:  5'- aGGAGCCACAGCAGCAGGAGCCaCaGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125686 0.7 0.42421
Target:  5'- aGGGGCUccugcugcugugGCuccugcuguuguGGCuccuGCAGGGGCUCCUGCu -3'
miRNA:   3'- -CCUCGG------------UG------------UCGu---CGUCCUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 125654 1.04 0.001931
Target:  5'- gGGAGCCACAGCAGCGGGAGCCCCaGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125624 0.93 0.013118
Target:  5'- gGGAGCCACAGCAGCGGGAGCCaCaGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125594 0.93 0.013118
Target:  5'- gGGAGCCACAGCAGCGGGAGCCaCaGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.