miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 5' -60.4 NC_003409.1 + 24215 0.7 0.42421
Target:  5'- uGGGGCgCGcCAGCGGUGGGcggGGCCCCa-- -3'
miRNA:   3'- -CCUCG-GU-GUCGUCGUCC---UCGGGGacg -5'
13345 5' -60.4 NC_003409.1 + 24487 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24527 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24567 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24607 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24647 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24687 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24727 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 46769 0.7 0.432987
Target:  5'- aGuGCU--GGUGGCGGGGGCCCCaGCa -3'
miRNA:   3'- cCuCGGugUCGUCGUCCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 24447 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 128238 0.67 0.605413
Target:  5'- -aGGUgAgGGCAGCA-GAGCCCC-GCa -3'
miRNA:   3'- ccUCGgUgUCGUCGUcCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 61045 0.66 0.655862
Target:  5'- uGGGGCaC-CAGCAGagaaAGGAcccgCCCUGCg -3'
miRNA:   3'- -CCUCG-GuGUCGUCg---UCCUcg--GGGACG- -5'
13345 5' -60.4 NC_003409.1 + 125093 0.66 0.675967
Target:  5'- uGAGCaGCAGCAGCAGGAugaGCagCaGCa -3'
miRNA:   3'- cCUCGgUGUCGUCGUCCU---CGggGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125129 0.66 0.675967
Target:  5'- uGAGCaGCAGCAGCAGGAugaGCagCaGCa -3'
miRNA:   3'- cCUCGgUGUCGUCGUCCU---CGggGaCG- -5'
13345 5' -60.4 NC_003409.1 + 91747 0.66 0.675967
Target:  5'- --uGCCAaGGCaAGgGGGuGuCCCCUGCa -3'
miRNA:   3'- ccuCGGUgUCG-UCgUCCuC-GGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 107420 0.66 0.675967
Target:  5'- -uAGCCuucGCGGUGGGAGCCUgUUGCa -3'
miRNA:   3'- ccUCGGuguCGUCGUCCUCGGG-GACG- -5'
13345 5' -60.4 NC_003409.1 + 125175 0.66 0.675967
Target:  5'- aGGAGCagcaggaugaGCAGCAGCAGGAugaGCagCaGCa -3'
miRNA:   3'- -CCUCGg---------UGUCGUCGUCCU---CGggGaCG- -5'
13345 5' -60.4 NC_003409.1 + 19150 0.66 0.665928
Target:  5'- aGGGGcCCGCgggGGCAGCuccAGGcgaccaaaauGGCCCC-GCg -3'
miRNA:   3'- -CCUC-GGUG---UCGUCG---UCC----------UCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 109108 0.66 0.665928
Target:  5'- aGGAGCCACuGUccc-GGAGCCggCUGCg -3'
miRNA:   3'- -CCUCGGUGuCGucguCCUCGGg-GACG- -5'
13345 5' -60.4 NC_003409.1 + 116242 0.66 0.655862
Target:  5'- aGGAGCUgucCGGCGGCcgcGGAuGCCCUgaGCu -3'
miRNA:   3'- -CCUCGGu--GUCGUCGu--CCU-CGGGGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.