miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13351 3' -62.1 NC_003409.1 + 88036 0.66 0.592915
Target:  5'- gUGUCAGGggucuCCGGCguCGCaCAGaCGCCGGg -3'
miRNA:   3'- -ACGGUCC-----GGUCGauGCG-GUC-GCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 22559 0.66 0.591914
Target:  5'- cUGCCAccaucauGGCCucggauuGUUGCGagaauucccuguCCAGUGCCAGa -3'
miRNA:   3'- -ACGGU-------CCGGu------CGAUGC------------GGUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 31672 0.66 0.582916
Target:  5'- gGCCAGGCCuaauGggGUGUgGGgGCCAGa -3'
miRNA:   3'- aCGGUCCGGu---CgaUGCGgUCgCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 93556 0.66 0.57295
Target:  5'- cGCCAGGaaacaGGCgGCGgCAGuCGCCAc -3'
miRNA:   3'- aCGGUCCgg---UCGaUGCgGUC-GCGGUc -5'
13351 3' -62.1 NC_003409.1 + 110071 0.66 0.553148
Target:  5'- cGCCuGGCCgaccaGGCgcuCGCCGGUGgCAa -3'
miRNA:   3'- aCGGuCCGG-----UCGau-GCGGUCGCgGUc -5'
13351 3' -62.1 NC_003409.1 + 109096 0.66 0.553148
Target:  5'- -cCCGGaGCCGGCUGCGUCuG-GCCGa -3'
miRNA:   3'- acGGUC-CGGUCGAUGCGGuCgCGGUc -5'
13351 3' -62.1 NC_003409.1 + 53243 0.66 0.543322
Target:  5'- gGUCAGGUCAGgUACGUguucgcgcgaCGGCGgCGGa -3'
miRNA:   3'- aCGGUCCGGUCgAUGCG----------GUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 99657 0.66 0.543322
Target:  5'- cUGCgCAGcacGUguGCUGCGCCA-CGCCAa -3'
miRNA:   3'- -ACG-GUC---CGguCGAUGCGGUcGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 119967 0.66 0.543322
Target:  5'- aGCaCGcGCgCGGCgcccACGCCGGCGCCuGg -3'
miRNA:   3'- aCG-GUcCG-GUCGa---UGCGGUCGCGGuC- -5'
13351 3' -62.1 NC_003409.1 + 46599 0.66 0.543322
Target:  5'- cUGCCAGGCUuGCUgGgGCCccCGCCAc -3'
miRNA:   3'- -ACGGUCCGGuCGA-UgCGGucGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 84362 0.66 0.533554
Target:  5'- gGCCAGGUaUGGCUAC-CCAauGUGCCAa -3'
miRNA:   3'- aCGGUCCG-GUCGAUGcGGU--CGCGGUc -5'
13351 3' -62.1 NC_003409.1 + 120212 0.66 0.533554
Target:  5'- cGuCCAGG-CGGCUGgcacacgggcCGUgAGCGCCAGc -3'
miRNA:   3'- aC-GGUCCgGUCGAU----------GCGgUCGCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 73884 0.66 0.533554
Target:  5'- cUGCC-GGCCAGC-GCGuuccucCCGGCGCUc- -3'
miRNA:   3'- -ACGGuCCGGUCGaUGC------GGUCGCGGuc -5'
13351 3' -62.1 NC_003409.1 + 131445 0.67 0.52385
Target:  5'- gUGCCuugGGaGUCAGCUGCGCCuguuuucGUGCCc- -3'
miRNA:   3'- -ACGG---UC-CGGUCGAUGCGGu------CGCGGuc -5'
13351 3' -62.1 NC_003409.1 + 110039 0.67 0.52385
Target:  5'- gGCCGuagggguacgguGGCaguGUUGCGCCGGgCGCCAc -3'
miRNA:   3'- aCGGU------------CCGgu-CGAUGCGGUC-GCGGUc -5'
13351 3' -62.1 NC_003409.1 + 107885 0.67 0.504651
Target:  5'- uUGUC-GGCCAGCgcucGCaCCAGCGgCAGc -3'
miRNA:   3'- -ACGGuCCGGUCGa---UGcGGUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 27859 0.67 0.495165
Target:  5'- aGCCcacaaAGGCgccaCAGCgACGCCGGCG-CAGg -3'
miRNA:   3'- aCGG-----UCCG----GUCGaUGCGGUCGCgGUC- -5'
13351 3' -62.1 NC_003409.1 + 20641 0.67 0.485761
Target:  5'- cGCCAGGCC----GCGCCcG-GCCAGg -3'
miRNA:   3'- aCGGUCCGGucgaUGCGGuCgCGGUC- -5'
13351 3' -62.1 NC_003409.1 + 51816 0.67 0.476443
Target:  5'- gGCUGGcGCguGCUACGCCGGaC-CCGGc -3'
miRNA:   3'- aCGGUC-CGguCGAUGCGGUC-GcGGUC- -5'
13351 3' -62.1 NC_003409.1 + 27678 0.67 0.476443
Target:  5'- aGUCGGuGCgGcCUGCGCCGGCGUCGc -3'
miRNA:   3'- aCGGUC-CGgUcGAUGCGGUCGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.