miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13355 5' -56.1 NC_003409.1 + 118062 0.66 0.90208
Target:  5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3'
miRNA:   3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5'
13355 5' -56.1 NC_003409.1 + 118154 0.66 0.90208
Target:  5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3'
miRNA:   3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5'
13355 5' -56.1 NC_003409.1 + 118039 0.66 0.90208
Target:  5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3'
miRNA:   3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5'
13355 5' -56.1 NC_003409.1 + 118131 0.66 0.90208
Target:  5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3'
miRNA:   3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5'
13355 5' -56.1 NC_003409.1 + 118223 0.66 0.90208
Target:  5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3'
miRNA:   3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5'
13355 5' -56.1 NC_003409.1 + 118177 0.66 0.90208
Target:  5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3'
miRNA:   3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5'
13355 5' -56.1 NC_003409.1 + 118016 0.66 0.90208
Target:  5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3'
miRNA:   3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5'
13355 5' -56.1 NC_003409.1 + 115590 0.66 0.90208
Target:  5'- gCUCaGAGCUcCuuGACGAGccGCGCc -3'
miRNA:   3'- aGAGgUUCGAuGggCUGCUCcaCGCG- -5'
13355 5' -56.1 NC_003409.1 + 118085 0.66 0.90208
Target:  5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3'
miRNA:   3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5'
13355 5' -56.1 NC_003409.1 + 118108 0.66 0.90208
Target:  5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3'
miRNA:   3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5'
13355 5' -56.1 NC_003409.1 + 118246 0.66 0.90208
Target:  5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3'
miRNA:   3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5'
13355 5' -56.1 NC_003409.1 + 118200 0.66 0.90208
Target:  5'- --aCCAGGUU-CCCGGgGAGGaGgGCa -3'
miRNA:   3'- agaGGUUCGAuGGGCUgCUCCaCgCG- -5'
13355 5' -56.1 NC_003409.1 + 119798 0.66 0.895621
Target:  5'- --gCCAGGCg--CCGGCGuGG-GCGCc -3'
miRNA:   3'- agaGGUUCGaugGGCUGCuCCaCGCG- -5'
13355 5' -56.1 NC_003409.1 + 16161 0.66 0.895621
Target:  5'- gUCUCCGuuuGCUGCuuGc---GGUGCGUg -3'
miRNA:   3'- -AGAGGUu--CGAUGggCugcuCCACGCG- -5'
13355 5' -56.1 NC_003409.1 + 38606 0.66 0.895621
Target:  5'- aUCcagCCAAGUUGCgCGcCGAGGcGcCGCa -3'
miRNA:   3'- -AGa--GGUUCGAUGgGCuGCUCCaC-GCG- -5'
13355 5' -56.1 NC_003409.1 + 24603 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5'
13355 5' -56.1 NC_003409.1 + 24523 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5'
13355 5' -56.1 NC_003409.1 + 24483 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5'
13355 5' -56.1 NC_003409.1 + 24443 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5'
13355 5' -56.1 NC_003409.1 + 24643 0.66 0.888931
Target:  5'- gCUCCugggguGCUGCCgGGgcuccUGGGGUGCuGCc -3'
miRNA:   3'- aGAGGuu----CGAUGGgCU-----GCUCCACG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.