miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13388 5' -58.6 NC_003409.1 + 55165 0.66 0.762338
Target:  5'- uUACCCGGgcc-CGGUGCUACUUCCAg -3'
miRNA:   3'- uGUGGGUCgaucGUCACGAUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 4211 0.66 0.742983
Target:  5'- gGCGCCCAGCUGuuuGCGgccaacucuGUGCUcuACCUgaCCAg -3'
miRNA:   3'- -UGUGGGUCGAU---CGU---------CACGA--UGGG--GGU- -5'
13388 5' -58.6 NC_003409.1 + 5793 0.66 0.742005
Target:  5'- -gACUCAGCUGGUuccgGCcgaggagUACCCCCAc -3'
miRNA:   3'- ugUGGGUCGAUCGuca-CG-------AUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 102861 0.66 0.723236
Target:  5'- gGCGCCC-GCUAGcCAGaGCcUACUUCCAc -3'
miRNA:   3'- -UGUGGGuCGAUC-GUCaCG-AUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 122186 0.66 0.714241
Target:  5'- uACACCCAGUguaagaaugucuguGguGUGCUGCgagaCCCUAu -3'
miRNA:   3'- -UGUGGGUCGau------------CguCACGAUG----GGGGU- -5'
13388 5' -58.6 NC_003409.1 + 3470 0.66 0.713239
Target:  5'- -uGCCCAGCaGGgAG-GCUuCCCCUAu -3'
miRNA:   3'- ugUGGGUCGaUCgUCaCGAuGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 113691 0.66 0.713239
Target:  5'- gGCGCCCAGaauccGCAccGUcCUACCCCCc -3'
miRNA:   3'- -UGUGGGUCgau--CGU--CAcGAUGGGGGu -5'
13388 5' -58.6 NC_003409.1 + 119394 0.66 0.712235
Target:  5'- uAUACCCAGCUGGgucuaccCAGcUGCguaaACCCCg- -3'
miRNA:   3'- -UGUGGGUCGAUC-------GUC-ACGa---UGGGGgu -5'
13388 5' -58.6 NC_003409.1 + 76780 0.67 0.703171
Target:  5'- gGCA-CCAGgaGGCGGUuuaGCggUGCCCCCGu -3'
miRNA:   3'- -UGUgGGUCgaUCGUCA---CG--AUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 42009 0.67 0.703171
Target:  5'- aGCGagaCCAGCUcuCcGUGCcACCCCCAc -3'
miRNA:   3'- -UGUg--GGUCGAucGuCACGaUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 51807 0.67 0.682863
Target:  5'- aACugCagaGGCUGGCGcGUGCUACgCCgGa -3'
miRNA:   3'- -UGugGg--UCGAUCGU-CACGAUGgGGgU- -5'
13388 5' -58.6 NC_003409.1 + 119226 0.67 0.672641
Target:  5'- gGCaACCuCAGCUgggaauaccAGCGGa-CUACCCCCAa -3'
miRNA:   3'- -UG-UGG-GUCGA---------UCGUCacGAUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 88201 0.67 0.67264
Target:  5'- gGCGCCUuagGGggAGCAgGUGCUgcaGCCCCUg -3'
miRNA:   3'- -UGUGGG---UCgaUCGU-CACGA---UGGGGGu -5'
13388 5' -58.6 NC_003409.1 + 23754 0.67 0.67264
Target:  5'- gGCaACCuCAGCUgggaauaccAGCGGa-CUACCCCCAa -3'
miRNA:   3'- -UG-UGG-GUCGA---------UCGUCacGAUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 130759 0.67 0.662384
Target:  5'- -gGCCCAGCUgGGCAGcaccguCCCCCGc -3'
miRNA:   3'- ugUGGGUCGA-UCGUCacgau-GGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 26344 0.67 0.656218
Target:  5'- gACAUCCAGCUcuccgguacaggcgcAGgGGUGUaUGCCCUCGu -3'
miRNA:   3'- -UGUGGGUCGA---------------UCgUCACG-AUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 33066 0.67 0.652104
Target:  5'- cGCACCCAGCguucguGUucaucGCUGCCCCa- -3'
miRNA:   3'- -UGUGGGUCGau----CGuca--CGAUGGGGgu -5'
13388 5' -58.6 NC_003409.1 + 32294 0.68 0.635625
Target:  5'- gGCAUCCAgGCUGGCGGacaccucccacgugGCcagaGCCCCCGu -3'
miRNA:   3'- -UGUGGGU-CGAUCGUCa-------------CGa---UGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 128072 0.68 0.621199
Target:  5'- -gGCCCAuGCggGGCucUGCUGCCCUCAc -3'
miRNA:   3'- ugUGGGU-CGa-UCGucACGAUGGGGGU- -5'
13388 5' -58.6 NC_003409.1 + 47361 0.68 0.621199
Target:  5'- cACugCUAGCUGGguGuUGCUGUCCCa- -3'
miRNA:   3'- -UGugGGUCGAUCguC-ACGAUGGGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.