miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13415 5' -43.3 NC_003409.1 + 94327 0.66 1
Target:  5'- aCAACCGgCUGGGggGGGcgguguugAGCUg -3'
miRNA:   3'- gGUUGGCgGAUCCuuUUUuua-----UUGGu -5'
13415 5' -43.3 NC_003409.1 + 54155 0.66 1
Target:  5'- aCAGCCGUUcagaaAGGAcGAAAGguUAACCAg -3'
miRNA:   3'- gGUUGGCGGa----UCCUuUUUUU--AUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 50643 0.66 1
Target:  5'- gUCAACCcCUUAGGGAGcAAGUggUCGc -3'
miRNA:   3'- -GGUUGGcGGAUCCUUUuUUUAuuGGU- -5'
13415 5' -43.3 NC_003409.1 + 78115 0.66 1
Target:  5'- aCCAACCGUucaugauauauCUAGGAGugGA--GACCc -3'
miRNA:   3'- -GGUUGGCG-----------GAUCCUUuuUUuaUUGGu -5'
13415 5' -43.3 NC_003409.1 + 49207 0.66 1
Target:  5'- gCAGgCGCCUaugacuAGGAGGAAGAgcACUg -3'
miRNA:   3'- gGUUgGCGGA------UCCUUUUUUUauUGGu -5'
13415 5' -43.3 NC_003409.1 + 4571 0.66 1
Target:  5'- gCCAGgUGCUggAGGGuguAAGAUGACCc -3'
miRNA:   3'- -GGUUgGCGGa-UCCUuu-UUUUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 91753 0.66 1
Target:  5'- cUCAGCUGCCaAGGcAAGGGGGUGuCCc -3'
miRNA:   3'- -GGUUGGCGGaUCC-UUUUUUUAUuGGu -5'
13415 5' -43.3 NC_003409.1 + 90181 0.66 1
Target:  5'- aCGGCCGCC-AGuAAu--GAUAACCGa -3'
miRNA:   3'- gGUUGGCGGaUCcUUuuuUUAUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 67840 0.66 1
Target:  5'- aCCAGCCacCCUcguccgaggAGGAcgGAGAaGACCAa -3'
miRNA:   3'- -GGUUGGc-GGA---------UCCUuuUUUUaUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 9988 0.66 1
Target:  5'- gCCAGCCGCa---GAAAGAGAcggucAGCCAg -3'
miRNA:   3'- -GGUUGGCGgaucCUUUUUUUa----UUGGU- -5'
13415 5' -43.3 NC_003409.1 + 35481 0.67 0.999998
Target:  5'- aCGACCuCCcugAGGAGAGGA--AACCAc -3'
miRNA:   3'- gGUUGGcGGa--UCCUUUUUUuaUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 11432 0.67 0.999998
Target:  5'- gCCAACUGuccCCUcGGAGAcaAGAGUAugCAg -3'
miRNA:   3'- -GGUUGGC---GGAuCCUUU--UUUUAUugGU- -5'
13415 5' -43.3 NC_003409.1 + 32005 0.67 0.999998
Target:  5'- -gGACCG-CUGGGAGucuGGGAUAACUc -3'
miRNA:   3'- ggUUGGCgGAUCCUUu--UUUUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 36595 0.67 0.999998
Target:  5'- aCC-ACUGCUgGGGAGAGGAGauGCCu -3'
miRNA:   3'- -GGuUGGCGGaUCCUUUUUUUauUGGu -5'
13415 5' -43.3 NC_003409.1 + 127987 0.67 0.999997
Target:  5'- gCAGucCUGCCUGGGGcaccaaucAGAAAGUAGCUu -3'
miRNA:   3'- gGUU--GGCGGAUCCU--------UUUUUUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 132570 0.68 0.999996
Target:  5'- gCCAACCGUCgaguGGc--GAAGUAACUg -3'
miRNA:   3'- -GGUUGGCGGau--CCuuuUUUUAUUGGu -5'
13415 5' -43.3 NC_003409.1 + 121529 0.68 0.999996
Target:  5'- gCCAcaacGCCGCCUGGuGGAAccgggcaguAUAACUAg -3'
miRNA:   3'- -GGU----UGGCGGAUC-CUUUuuu------UAUUGGU- -5'
13415 5' -43.3 NC_003409.1 + 80178 0.68 0.999996
Target:  5'- --cGCCGCCUgaaAGGGGAAGu---GCCGu -3'
miRNA:   3'- gguUGGCGGA---UCCUUUUUuuauUGGU- -5'
13415 5' -43.3 NC_003409.1 + 11679 0.68 0.999994
Target:  5'- gCCGACCGCUgcgAGGAcgu-----GCCAu -3'
miRNA:   3'- -GGUUGGCGGa--UCCUuuuuuuauUGGU- -5'
13415 5' -43.3 NC_003409.1 + 120364 0.68 0.999992
Target:  5'- gCCAGCCGCCU-GGAcgucGAAAgcACgCAa -3'
miRNA:   3'- -GGUUGGCGGAuCCUuu--UUUUauUG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.