miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13423 5' -46.4 NC_003409.1 + 34727 0.66 0.99995
Target:  5'- gGGUGugGGGCCCAGaauCUUcccGCCUcuguCCa -3'
miRNA:   3'- -CCAUuuUCUGGGUUgu-GAA---CGGAu---GG- -5'
13423 5' -46.4 NC_003409.1 + 130918 0.66 0.99995
Target:  5'- uGGUGAGGauuccgaccGGCCCAcuACACccaggGCC-ACCa -3'
miRNA:   3'- -CCAUUUU---------CUGGGU--UGUGaa---CGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 88849 0.66 0.999934
Target:  5'- -----cAGcCCCcGCGCcccUGCCUGCCg -3'
miRNA:   3'- ccauuuUCuGGGuUGUGa--ACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 96524 0.66 0.999934
Target:  5'- ------cGAUCCGuGCACUUGCaCUACUc -3'
miRNA:   3'- ccauuuuCUGGGU-UGUGAACG-GAUGG- -5'
13423 5' -46.4 NC_003409.1 + 6466 0.66 0.999934
Target:  5'- aGUuuguGGGCCCAgaagaGC-CUUGCCUuauCCa -3'
miRNA:   3'- cCAuuu-UCUGGGU-----UGuGAACGGAu--GG- -5'
13423 5' -46.4 NC_003409.1 + 108987 0.66 0.999934
Target:  5'- ------cGACCCcACGCgcccgGCCUGCg -3'
miRNA:   3'- ccauuuuCUGGGuUGUGaa---CGGAUGg -5'
13423 5' -46.4 NC_003409.1 + 101884 0.66 0.999932
Target:  5'- uGGUGGcGGAaaauacuCCCAuu-CUUGCCUucACCg -3'
miRNA:   3'- -CCAUUuUCU-------GGGUuguGAACGGA--UGG- -5'
13423 5' -46.4 NC_003409.1 + 88116 0.66 0.99993
Target:  5'- -----cAGACCCu-CACUcaucuggugcagGCCUACCg -3'
miRNA:   3'- ccauuuUCUGGGuuGUGAa-----------CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 23923 0.66 0.999912
Target:  5'- cGGUGGAugGGugCCAGgAUUauagggGCCUGuCCa -3'
miRNA:   3'- -CCAUUU--UCugGGUUgUGAa-----CGGAU-GG- -5'
13423 5' -46.4 NC_003409.1 + 15432 0.66 0.999912
Target:  5'- gGGUGAAGccuGACCCAugACaaGCUgACg -3'
miRNA:   3'- -CCAUUUU---CUGGGUugUGaaCGGaUGg -5'
13423 5' -46.4 NC_003409.1 + 110384 0.66 0.999896
Target:  5'- gGGUAGAuggccugaaauaauGACCaCAGCAacaaccccCUgccGCCUACCg -3'
miRNA:   3'- -CCAUUUu-------------CUGG-GUUGU--------GAa--CGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 27282 0.66 0.999884
Target:  5'- aGGcAGcuGAUgCAGCGgcUGCCUGCCa -3'
miRNA:   3'- -CCaUUuuCUGgGUUGUgaACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 51834 0.66 0.999884
Target:  5'- -----cGGACCCGGCACUcacCCguggACCg -3'
miRNA:   3'- ccauuuUCUGGGUUGUGAac-GGa---UGG- -5'
13423 5' -46.4 NC_003409.1 + 133782 0.67 0.999849
Target:  5'- cGGgcuGGGGACCCucgGGCACUU-CCaACCc -3'
miRNA:   3'- -CCau-UUUCUGGG---UUGUGAAcGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 110111 0.67 0.999849
Target:  5'- -----cGGACaCCGGCAuCUUGCCagcGCCg -3'
miRNA:   3'- ccauuuUCUG-GGUUGU-GAACGGa--UGG- -5'
13423 5' -46.4 NC_003409.1 + 83873 0.67 0.999804
Target:  5'- gGGgcguGGGGCUCua-ACUUGCCaACCg -3'
miRNA:   3'- -CCauu-UUCUGGGuugUGAACGGaUGG- -5'
13423 5' -46.4 NC_003409.1 + 128328 0.67 0.999748
Target:  5'- uGGUGGccggcAGGugUCAuGCACa-GCCUGCCu -3'
miRNA:   3'- -CCAUU-----UUCugGGU-UGUGaaCGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 108722 0.67 0.999748
Target:  5'- cGGUuuAGGGacucgcCCCAGCuaGCUgGCCUGCa -3'
miRNA:   3'- -CCAuuUUCU------GGGUUG--UGAaCGGAUGg -5'
13423 5' -46.4 NC_003409.1 + 60153 0.67 0.999748
Target:  5'- cGGcGGGAGAgCCAAucugaugcCAC-UGCCUAUCg -3'
miRNA:   3'- -CCaUUUUCUgGGUU--------GUGaACGGAUGG- -5'
13423 5' -46.4 NC_003409.1 + 46700 0.67 0.999748
Target:  5'- --cAGGAGGCCUAucccACGCUcGCCgccaGCCa -3'
miRNA:   3'- ccaUUUUCUGGGU----UGUGAaCGGa---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.