miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 134207 0.68 0.987315
Target:  5'- -cCCCAuGUCAUcAGGCGGucUGUGCCa -3'
miRNA:   3'- guGGGU-UAGUGuUCUGCUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 132796 0.67 0.990229
Target:  5'- uUACCUGGcacgcgCACAGGcGCGcgGCGCGCUg -3'
miRNA:   3'- -GUGGGUUa-----GUGUUC-UGCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 130730 0.72 0.886539
Target:  5'- aCAUCCAGUgAC-GGGCGAcACGCuGCCc -3'
miRNA:   3'- -GUGGGUUAgUGuUCUGCUuUGCG-CGG- -5'
13428 3' -50 NC_003409.1 + 127654 0.71 0.940743
Target:  5'- cCGCCCGAa-ACAAGugGgcGgGCGCUa -3'
miRNA:   3'- -GUGGGUUagUGUUCugCuuUgCGCGG- -5'
13428 3' -50 NC_003409.1 + 127377 0.7 0.958153
Target:  5'- cCGCCgAuggcCACcAGAUGgcACGCGCCg -3'
miRNA:   3'- -GUGGgUua--GUGuUCUGCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 127290 0.74 0.821895
Target:  5'- gCGCCUGAgguCGGGACGGAgcaccgGCGCGCCc -3'
miRNA:   3'- -GUGGGUUaguGUUCUGCUU------UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 121278 0.68 0.979527
Target:  5'- aGCCCGcUCAUAAGACcauAACcugGUGCCa -3'
miRNA:   3'- gUGGGUuAGUGUUCUGcu-UUG---CGCGG- -5'
13428 3' -50 NC_003409.1 + 119614 0.66 0.996555
Target:  5'- -uCCCGuUCGagcuAGGCGAc-CGCGCCa -3'
miRNA:   3'- guGGGUuAGUgu--UCUGCUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 118730 0.67 0.99259
Target:  5'- cCACCCAuuUCcCGGGGC----CGCGCCa -3'
miRNA:   3'- -GUGGGUu-AGuGUUCUGcuuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 118299 0.66 0.994473
Target:  5'- -uCCCGGggAgGAGGCuGGggUGCGCCg -3'
miRNA:   3'- guGGGUUagUgUUCUG-CUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 114435 0.69 0.965382
Target:  5'- aCACCCGcaGUCAauCAGGGCcgugccCGCGCCu -3'
miRNA:   3'- -GUGGGU--UAGU--GUUCUGcuuu--GCGCGG- -5'
13428 3' -50 NC_003409.1 + 114021 0.73 0.847766
Target:  5'- aCGCCCAaaaGUCACAAGAgacUGAAGuCGCuGCUg -3'
miRNA:   3'- -GUGGGU---UAGUGUUCU---GCUUU-GCG-CGG- -5'
13428 3' -50 NC_003409.1 + 113714 0.69 0.968331
Target:  5'- gGCCCAc-CGCGuguucgaGGGCGAGaaugGCGUGCCa -3'
miRNA:   3'- gUGGGUuaGUGU-------UCUGCUU----UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 113594 0.67 0.988845
Target:  5'- cCGCCC-GUCGCu-GGCGcAGGCGauCGCCg -3'
miRNA:   3'- -GUGGGuUAGUGuuCUGC-UUUGC--GCGG- -5'
13428 3' -50 NC_003409.1 + 113466 0.7 0.949951
Target:  5'- uGCCCAGgcCGCcgaccaugcuAGGGCGAuacCGCGCCa -3'
miRNA:   3'- gUGGGUUa-GUG----------UUCUGCUuu-GCGCGG- -5'
13428 3' -50 NC_003409.1 + 111200 0.68 0.985627
Target:  5'- gCACCC-GUCAUucGAguAAugGCGCCc -3'
miRNA:   3'- -GUGGGuUAGUGuuCUgcUUugCGCGG- -5'
13428 3' -50 NC_003409.1 + 110975 0.68 0.981742
Target:  5'- -cCCCGGaCugAGGGCGAAGgccgGCGCCc -3'
miRNA:   3'- guGGGUUaGugUUCUGCUUUg---CGCGG- -5'
13428 3' -50 NC_003409.1 + 109849 0.72 0.913203
Target:  5'- gGCCCA--CAcCAAGACGGcuauGCGCGCg -3'
miRNA:   3'- gUGGGUuaGU-GUUCUGCUu---UGCGCGg -5'
13428 3' -50 NC_003409.1 + 109836 0.72 0.906917
Target:  5'- cCGCCCAAgacgccgcggCGgGAGGCG-GugGCGCCc -3'
miRNA:   3'- -GUGGGUUa---------GUgUUCUGCuUugCGCGG- -5'
13428 3' -50 NC_003409.1 + 109474 0.68 0.981742
Target:  5'- -uCCCGugggCcCAAGACG--GCGCGCCc -3'
miRNA:   3'- guGGGUua--GuGUUCUGCuuUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.