Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13428 | 3' | -50 | NC_003409.1 | + | 113594 | 0.67 | 0.988845 |
Target: 5'- cCGCCC-GUCGCu-GGCGcAGGCGauCGCCg -3' miRNA: 3'- -GUGGGuUAGUGuuCUGC-UUUGC--GCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 107985 | 0.66 | 0.995257 |
Target: 5'- gUACUCuGUgGCAGGGagcuccaGggGCGUGCCc -3' miRNA: 3'- -GUGGGuUAgUGUUCUg------CuuUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 21619 | 0.66 | 0.994955 |
Target: 5'- aUACCCAuguuggguccacaaGUCuaaggccaGCGAGACaagagcguuucguGAAACGUGCCu -3' miRNA: 3'- -GUGGGU--------------UAG--------UGUUCUG-------------CUUUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 60619 | 0.67 | 0.993954 |
Target: 5'- uCGCCaGGUCACGggcguguucaguaauAGACGGGACGCauuCCu -3' miRNA: 3'- -GUGGgUUAGUGU---------------UCUGCUUUGCGc--GG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 40591 | 0.67 | 0.993586 |
Target: 5'- aGgCUAGUCuaguAgAGGGCGcgGCGCGCCu -3' miRNA: 3'- gUgGGUUAG----UgUUCUGCuuUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 47742 | 0.67 | 0.991474 |
Target: 5'- aCACCUcuGUCAgAGGAUGccuguCGUGCCg -3' miRNA: 3'- -GUGGGu-UAGUgUUCUGCuuu--GCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 27219 | 0.67 | 0.991474 |
Target: 5'- gGCCCAAcugCuCGAGGCGAcAACgccaucguGCGCCu -3' miRNA: 3'- gUGGGUUa--GuGUUCUGCU-UUG--------CGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 24751 | 0.67 | 0.990229 |
Target: 5'- -uCCCccUCcgGGGAgGggGCGCGCCg -3' miRNA: 3'- guGGGuuAGugUUCUgCuuUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 26008 | 0.67 | 0.991355 |
Target: 5'- aGCCCAcggacgaGUCAUcuGAagGAGACGuCGCCu -3' miRNA: 3'- gUGGGU-------UAGUGuuCUg-CUUUGC-GCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 41119 | 0.66 | 0.995257 |
Target: 5'- gCGCCCAuucUCAC-GGACcAGcACGCGCg -3' miRNA: 3'- -GUGGGUu--AGUGuUCUGcUU-UGCGCGg -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 35883 | 0.66 | 0.995257 |
Target: 5'- aCACCCuggggcUCugGaAGGCGAAGCGauCCa -3' miRNA: 3'- -GUGGGuu----AGugU-UCUGCUUUGCgcGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 45890 | 0.66 | 0.995883 |
Target: 5'- gCGCCCGGgguggccUgACAAGACGcgGCauaCGCCg -3' miRNA: 3'- -GUGGGUU-------AgUGUUCUGCuuUGc--GCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 81544 | 0.66 | 0.996776 |
Target: 5'- gGCCCGgggagugauggagcaGuUCGCGAaGCGuaaAGGCGCGCCg -3' miRNA: 3'- gUGGGU---------------U-AGUGUUcUGC---UUUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 88075 | 0.66 | 0.996555 |
Target: 5'- cCGCCCAAgcCGCAGcACGAAACacgGCuuGCCg -3' miRNA: 3'- -GUGGGUUa-GUGUUcUGCUUUG---CG--CGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 119614 | 0.66 | 0.996555 |
Target: 5'- -uCCCGuUCGagcuAGGCGAc-CGCGCCa -3' miRNA: 3'- guGGGUuAGUgu--UCUGCUuuGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 18888 | 0.66 | 0.996555 |
Target: 5'- uGCCCAGUCGgGcGAUGggGCuuauaGUGUCu -3' miRNA: 3'- gUGGGUUAGUgUuCUGCuuUG-----CGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 101610 | 0.66 | 0.996498 |
Target: 5'- uUAUUCAgggugucGUCGgAGGugGGuGGCGCGCCg -3' miRNA: 3'- -GUGGGU-------UAGUgUUCugCU-UUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 90831 | 0.66 | 0.995948 |
Target: 5'- --gCCGGUCACGcAGACG-GGCGCGg- -3' miRNA: 3'- gugGGUUAGUGU-UCUGCuUUGCGCgg -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 33998 | 0.66 | 0.995948 |
Target: 5'- -cCCCAca-ACAAGgguACG-GGCGCGCCa -3' miRNA: 3'- guGGGUuagUGUUC---UGCuUUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 37017 | 0.66 | 0.995948 |
Target: 5'- aGCUCGAUCAC--GACGGGAUGaUGUCu -3' miRNA: 3'- gUGGGUUAGUGuuCUGCUUUGC-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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