Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13430 | 5' | -51.5 | NC_003409.1 | + | 118784 | 0.66 | 0.987315 |
Target: 5'- ---cCUCGcGCAUuacgcgcgcgGCgGcACGGAGGACGg -3' miRNA: 3'- uuuuGAGC-CGUA----------UGgU-UGCCUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 87608 | 0.66 | 0.985627 |
Target: 5'- uGGGCgugCGGCGgaauCCAACuGGGGGCa -3' miRNA: 3'- uUUUGa--GCCGUau--GGUUGcCUCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 14986 | 0.66 | 0.985627 |
Target: 5'- ---cCUUGcGCGuUugCGGCGGAGGGCc -3' miRNA: 3'- uuuuGAGC-CGU-AugGUUGCCUCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 90878 | 0.66 | 0.983772 |
Target: 5'- gAAAACUCGGauu-CCAGugaGGAGGAUc -3' miRNA: 3'- -UUUUGAGCCguauGGUUg--CCUCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 45872 | 0.66 | 0.983772 |
Target: 5'- cAAGACgCGGCAUACgccgCGACGGGcGACu -3' miRNA: 3'- -UUUUGaGCCGUAUG----GUUGCCUcCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 16840 | 0.66 | 0.979527 |
Target: 5'- -uGACUUuGCAUGgCAG-GGAGGACGu -3' miRNA: 3'- uuUUGAGcCGUAUgGUUgCCUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 132666 | 0.66 | 0.977118 |
Target: 5'- ----aUCGGaCAgcGCCAGCcaGGGGGACGg -3' miRNA: 3'- uuuugAGCC-GUa-UGGUUG--CCUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 65126 | 0.66 | 0.977118 |
Target: 5'- cGAACUCuaGGuCAUACCAGCccaucuccGGGGGCGa -3' miRNA: 3'- uUUUGAG--CC-GUAUGGUUGc-------CUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 23485 | 0.67 | 0.974507 |
Target: 5'- cGGGC-CGGCGgACCAAUGGgagcGGGGCa -3' miRNA: 3'- uUUUGaGCCGUaUGGUUGCC----UCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 119525 | 0.67 | 0.974507 |
Target: 5'- cGGGC-CGGCGgACCAAUGGgagcGGGGCa -3' miRNA: 3'- uUUUGaGCCGUaUGGUUGCC----UCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 65023 | 0.67 | 0.971686 |
Target: 5'- ---uUUCGGCAUACguaaUAACGG-GGACu -3' miRNA: 3'- uuuuGAGCCGUAUG----GUUGCCuCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 81226 | 0.67 | 0.961886 |
Target: 5'- -cGACUgUGGCAUAUaCGGCcGAGGACGa -3' miRNA: 3'- uuUUGA-GCCGUAUG-GUUGcCUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 96872 | 0.68 | 0.949951 |
Target: 5'- -uGGCggaGGCGUGCCAAauaugGGAGGAaCGa -3' miRNA: 3'- uuUUGag-CCGUAUGGUUg----CCUCCU-GC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 89295 | 0.68 | 0.949951 |
Target: 5'- gAAAAUUC-GCAgGCgCGAUGGAGGGCGc -3' miRNA: 3'- -UUUUGAGcCGUaUG-GUUGCCUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 66759 | 0.69 | 0.91923 |
Target: 5'- uGAGAUUCGGCcguCCA--GGAGGACa -3' miRNA: 3'- -UUUUGAGCCGuauGGUugCCUCCUGc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 35794 | 0.69 | 0.91923 |
Target: 5'- uAGGC-CGGCAgacgcgUCAAUGGGGGACGu -3' miRNA: 3'- uUUUGaGCCGUau----GGUUGCCUCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 68671 | 0.69 | 0.918046 |
Target: 5'- cGAGugUCGGCcaccaagagagGCCAGCGGAgauGGAUGc -3' miRNA: 3'- -UUUugAGCCGua---------UGGUUGCCU---CCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 43111 | 0.7 | 0.892889 |
Target: 5'- uGAACUCGGUAUugacgcaAgCGGCGGcgAGGGCGg -3' miRNA: 3'- uUUUGAGCCGUA-------UgGUUGCC--UCCUGC- -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 128109 | 0.7 | 0.879251 |
Target: 5'- --cACUCGGCGUcguCC-ACGGGGGAg- -3' miRNA: 3'- uuuUGAGCCGUAu--GGuUGCCUCCUgc -5' |
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13430 | 5' | -51.5 | NC_003409.1 | + | 24213 | 0.7 | 0.879251 |
Target: 5'- ------gGGCGcGCCAGCGGuGGGCGg -3' miRNA: 3'- uuuugagCCGUaUGGUUGCCuCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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