miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13438 5' -51.5 NC_003409.1 + 14474 0.66 0.984142
Target:  5'- -cUACgGUUGCCGACGuguUGUUCuggaaGAGGCa -3'
miRNA:   3'- caGUG-CGACGGUUGUu--ACGAG-----UUCCG- -5'
13438 5' -51.5 NC_003409.1 + 15548 0.66 0.984142
Target:  5'- -cCAUGCUGCucgaaCAGCAAUugaaucCUCAGGGUg -3'
miRNA:   3'- caGUGCGACG-----GUUGUUAc-----GAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 121846 0.66 0.982128
Target:  5'- aUC-CGCUGCCAccuGCG-UGUUCccGGCg -3'
miRNA:   3'- cAGuGCGACGGU---UGUuACGAGuuCCG- -5'
13438 5' -51.5 NC_003409.1 + 24369 0.66 0.982128
Target:  5'- -cCACGUgccGCCGcgcgcGCAGUGCgCGAGGg -3'
miRNA:   3'- caGUGCGa--CGGU-----UGUUACGaGUUCCg -5'
13438 5' -51.5 NC_003409.1 + 131201 0.66 0.982128
Target:  5'- --aACGCgGCCAugAGcGCguaCGGGGCa -3'
miRNA:   3'- cagUGCGaCGGUugUUaCGa--GUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 73578 0.66 0.982128
Target:  5'- --aACGgUGCCGcagGCAAUGCcagcgCGGGGUa -3'
miRNA:   3'- cagUGCgACGGU---UGUUACGa----GUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 119936 0.66 0.979927
Target:  5'- -gCACGCgGCCAACAuaaaGUGUggauGGCc -3'
miRNA:   3'- caGUGCGaCGGUUGU----UACGaguuCCG- -5'
13438 5' -51.5 NC_003409.1 + 97191 0.66 0.97753
Target:  5'- aGUCACGCagagGuCCAgGCGcUGUUCAGGGa -3'
miRNA:   3'- -CAGUGCGa---C-GGU-UGUuACGAGUUCCg -5'
13438 5' -51.5 NC_003409.1 + 130518 0.66 0.975995
Target:  5'- -aCAUGCUGCCAcugccacggauggaACAucagagaugggucuAUGaUCAGGGCa -3'
miRNA:   3'- caGUGCGACGGU--------------UGU--------------UACgAGUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 58572 0.66 0.97493
Target:  5'- uUCACcaaGCUGCCAACuuuUGgUCAAGaaguGCg -3'
miRNA:   3'- cAGUG---CGACGGUUGuu-ACgAGUUC----CG- -5'
13438 5' -51.5 NC_003409.1 + 123762 0.66 0.97493
Target:  5'- aUUugGC-GCCAugGGUGCUgGugugugugggGGGCa -3'
miRNA:   3'- cAGugCGaCGGUugUUACGAgU----------UCCG- -5'
13438 5' -51.5 NC_003409.1 + 127399 0.66 0.972407
Target:  5'- -aCGCGCcGCCAGCAAauuuaaguccuggugGCUCAccugccAGGUa -3'
miRNA:   3'- caGUGCGaCGGUUGUUa--------------CGAGU------UCCG- -5'
13438 5' -51.5 NC_003409.1 + 72302 0.66 0.972116
Target:  5'- -gCAUGCUGCCAcUAGUGgaCGcuGGCu -3'
miRNA:   3'- caGUGCGACGGUuGUUACgaGUu-CCG- -5'
13438 5' -51.5 NC_003409.1 + 131501 0.66 0.972116
Target:  5'- uGUCccuCGggGCCAACGGUGCcCAguGGGUg -3'
miRNA:   3'- -CAGu--GCgaCGGUUGUUACGaGU--UCCG- -5'
13438 5' -51.5 NC_003409.1 + 46398 0.67 0.969082
Target:  5'- -gCAgGUUGCCAGCugaccAUGaCUCAaaccGGGCa -3'
miRNA:   3'- caGUgCGACGGUUGu----UAC-GAGU----UCCG- -5'
13438 5' -51.5 NC_003409.1 + 100887 0.67 0.965819
Target:  5'- gGUCG-GCUGCCuaAACGGcgccUGCcgCAAGGCc -3'
miRNA:   3'- -CAGUgCGACGG--UUGUU----ACGa-GUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 102493 0.67 0.965819
Target:  5'- -cCGCGCUGCCcucGCAA--CUCAugcGGGCc -3'
miRNA:   3'- caGUGCGACGGu--UGUUacGAGU---UCCG- -5'
13438 5' -51.5 NC_003409.1 + 88683 0.67 0.962322
Target:  5'- ---uCGCUGCCGGCAG-GCa-GGGGCg -3'
miRNA:   3'- caguGCGACGGUUGUUaCGagUUCCG- -5'
13438 5' -51.5 NC_003409.1 + 98751 0.67 0.958583
Target:  5'- cUCGCGCUuUCAACAGUuCUCAgacacuuuggaAGGCa -3'
miRNA:   3'- cAGUGCGAcGGUUGUUAcGAGU-----------UCCG- -5'
13438 5' -51.5 NC_003409.1 + 62974 0.67 0.958583
Target:  5'- cUC-UGCUGCCuguuauCGAUGCUCGAGa- -3'
miRNA:   3'- cAGuGCGACGGuu----GUUACGAGUUCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.