miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13444 5' -56.3 NC_003409.1 + 101968 0.68 0.810301
Target:  5'- gGGCAUGGuGACGGCGgUCucggucgaauucgACCGCGAUa- -3'
miRNA:   3'- -CCGUGCC-CUGUCGC-AG-------------UGGUGUUGgg -5'
13444 5' -56.3 NC_003409.1 + 131812 0.67 0.844606
Target:  5'- uGCAgGGGACuGCagcucUCACUACccGCCCa -3'
miRNA:   3'- cCGUgCCCUGuCGc----AGUGGUGu-UGGG- -5'
13444 5' -56.3 NC_003409.1 + 110150 0.67 0.839773
Target:  5'- gGGCGCGGaACAGCaGUgCGCCuaaaacuaucucaAACCCg -3'
miRNA:   3'- -CCGUGCCcUGUCG-CA-GUGGug-----------UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 125600 0.67 0.835695
Target:  5'- aGCAgCGGGagccacaGCAGCGggaGCCACAGCa- -3'
miRNA:   3'- cCGU-GCCC-------UGUCGCag-UGGUGUUGgg -5'
13444 5' -56.3 NC_003409.1 + 125645 0.67 0.835695
Target:  5'- aGCAgCGGGagccccaGCAGCGggaGCCACAGCa- -3'
miRNA:   3'- cCGU-GCCC-------UGUCGCag-UGGUGUUGgg -5'
13444 5' -56.3 NC_003409.1 + 63569 0.68 0.82824
Target:  5'- gGGCAgCGGcuCAGCGUCACCuauuCUCa -3'
miRNA:   3'- -CCGU-GCCcuGUCGCAGUGGuguuGGG- -5'
13444 5' -56.3 NC_003409.1 + 118490 0.68 0.823191
Target:  5'- cGGCGCGGcGCAccccaggaacccggcGCGgcgCACCcCAGCCUc -3'
miRNA:   3'- -CCGUGCCcUGU---------------CGCa--GUGGuGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 35906 0.68 0.81979
Target:  5'- aGGCGgaagGGGAgGGCG--ACCACAcACCCu -3'
miRNA:   3'- -CCGUg---CCCUgUCGCagUGGUGU-UGGG- -5'
13444 5' -56.3 NC_003409.1 + 3425 0.68 0.818936
Target:  5'- aGGCAUagagguacccgcaGGGAcCAGUGgggGCCGCAgACCCa -3'
miRNA:   3'- -CCGUG-------------CCCU-GUCGCag-UGGUGU-UGGG- -5'
13444 5' -56.3 NC_003409.1 + 86234 0.67 0.860209
Target:  5'- cGUGCGGGACGGUauuuuUCGgCGCAuCCCc -3'
miRNA:   3'- cCGUGCCCUGUCGc----AGUgGUGUuGGG- -5'
13444 5' -56.3 NC_003409.1 + 41160 0.67 0.864734
Target:  5'- uGUACGGGcagccucuuguggaACAGauUCGCCACGagcuggcGCCCa -3'
miRNA:   3'- cCGUGCCC--------------UGUCgcAGUGGUGU-------UGGG- -5'
13444 5' -56.3 NC_003409.1 + 128244 0.66 0.875
Target:  5'- uGGCGCaGGugAGgG-CAgCAgAGCCCc -3'
miRNA:   3'- -CCGUGcCCugUCgCaGUgGUgUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 56363 0.66 0.908154
Target:  5'- cGGagauaGGGACGauuauGCcaaaggCGCCACGACCCa -3'
miRNA:   3'- -CCgug--CCCUGU-----CGca----GUGGUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 50229 0.66 0.907546
Target:  5'- gGGCGaGGGAgCAGCGUCgucaaauGCUACGcuuuACCg -3'
miRNA:   3'- -CCGUgCCCU-GUCGCAG-------UGGUGU----UGGg -5'
13444 5' -56.3 NC_003409.1 + 105021 0.66 0.895569
Target:  5'- uGGCugGuGGcCAccGCGUCcuucauuuccGCCACGuCCCg -3'
miRNA:   3'- -CCGugC-CCuGU--CGCAG----------UGGUGUuGGG- -5'
13444 5' -56.3 NC_003409.1 + 75370 0.66 0.895569
Target:  5'- aGGCACGGGGCGaccuGCGccCugUuuGGCCUu -3'
miRNA:   3'- -CCGUGCCCUGU----CGCa-GugGugUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 18879 0.66 0.888935
Target:  5'- gGGCgAUGGGGCuuauAGUGUCuccuGCCAUaauaaggcugGACCCu -3'
miRNA:   3'- -CCG-UGCCCUG----UCGCAG----UGGUG----------UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 57455 0.66 0.882077
Target:  5'- aGCuuGCGaGGACAGCcuguugGUCAuCCACuguuAACCCa -3'
miRNA:   3'- cCG--UGC-CCUGUCG------CAGU-GGUG----UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 113288 0.66 0.882077
Target:  5'- uGGCAUGGGc---CGUUGCCGCGucguCCCc -3'
miRNA:   3'- -CCGUGCCCugucGCAGUGGUGUu---GGG- -5'
13444 5' -56.3 NC_003409.1 + 74026 0.66 0.881379
Target:  5'- cGGCAgaGGGACuacuguuGGCaacugCACCACcggGGCCCg -3'
miRNA:   3'- -CCGUg-CCCUG-------UCGca---GUGGUG---UUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.