miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13456 3' -45.2 NC_003409.1 + 100445 0.66 0.999847
Target:  5'- cGGCGCUGGac-CAUGGGA-CAu -3'
miRNA:   3'- -UCGCGGUCguuGUACCCUaGU- -5'
13456 3' -45.2 NC_003409.1 + 53899 0.66 0.999847
Target:  5'- cGGaUGCCAGUAGCAUGcugauGAUCGc -3'
miRNA:   3'- -UC-GCGGUCGUUGUACc----CUAGU- -5'
13456 3' -45.2 NC_003409.1 + 88684 0.66 0.999847
Target:  5'- cGCuGCCGGCAgGCAgGGGcgCGg -3'
miRNA:   3'- uCG-CGGUCGU-UGUaCCCuaGU- -5'
13456 3' -45.2 NC_003409.1 + 68431 0.66 0.999737
Target:  5'- cGcCGCCAGCAACcccucuGGAUCu -3'
miRNA:   3'- uC-GCGGUCGUUGuac---CCUAGu -5'
13456 3' -45.2 NC_003409.1 + 21563 0.66 0.999737
Target:  5'- cGUGCCuGCcaaggaGUGGGAUCu -3'
miRNA:   3'- uCGCGGuCGuug---UACCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 47302 0.66 0.999737
Target:  5'- cGUGCC-GCAGCAacUGGGG-CAc -3'
miRNA:   3'- uCGCGGuCGUUGU--ACCCUaGU- -5'
13456 3' -45.2 NC_003409.1 + 57223 0.66 0.999708
Target:  5'- -aCGCCAGCuggugcuccugucGCAUGGGaAUCGc -3'
miRNA:   3'- ucGCGGUCGu------------UGUACCC-UAGU- -5'
13456 3' -45.2 NC_003409.1 + 100033 0.66 0.999668
Target:  5'- aGGUGcCCAGCGACucucaagcaguaucuUGGGAUUu -3'
miRNA:   3'- -UCGC-GGUCGUUGu--------------ACCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 27850 0.66 0.99966
Target:  5'- aGGCGCCacAGCGACGccGGcgCAg -3'
miRNA:   3'- -UCGCGG--UCGUUGUacCCuaGU- -5'
13456 3' -45.2 NC_003409.1 + 131221 0.66 0.99966
Target:  5'- -aCGCCAGCGcCAgGGGAUgGg -3'
miRNA:   3'- ucGCGGUCGUuGUaCCCUAgU- -5'
13456 3' -45.2 NC_003409.1 + 83387 0.66 0.99966
Target:  5'- uGUGCagCGGCAACccgggccgcaAUGGGGUCGg -3'
miRNA:   3'- uCGCG--GUCGUUG----------UACCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 133034 0.67 0.999574
Target:  5'- cGGCGCCAGCGccuGCAggugccucaccaccgGGGccggGUCAu -3'
miRNA:   3'- -UCGCGGUCGU---UGUa--------------CCC----UAGU- -5'
13456 3' -45.2 NC_003409.1 + 82833 0.67 0.999564
Target:  5'- uGCGCCauGGUGGCggGGGAUg- -3'
miRNA:   3'- uCGCGG--UCGUUGuaCCCUAgu -5'
13456 3' -45.2 NC_003409.1 + 69249 0.67 0.999564
Target:  5'- aGGUGCCAGUAACAgaucccGGUCGu -3'
miRNA:   3'- -UCGCGGUCGUUGUacc---CUAGU- -5'
13456 3' -45.2 NC_003409.1 + 132308 0.67 0.999564
Target:  5'- uGGCGCC-GUGGCGUGGaGUCc -3'
miRNA:   3'- -UCGCGGuCGUUGUACCcUAGu -5'
13456 3' -45.2 NC_003409.1 + 46867 0.67 0.999445
Target:  5'- uGGCuGgCGGCgAGCGUGGGAUa- -3'
miRNA:   3'- -UCG-CgGUCG-UUGUACCCUAgu -5'
13456 3' -45.2 NC_003409.1 + 114394 0.67 0.999298
Target:  5'- uGGCGaCAGCGGgGUGGGGc-- -3'
miRNA:   3'- -UCGCgGUCGUUgUACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 119525 0.67 0.999298
Target:  5'- cGgGCCGGCGGaccaAUGGGAg-- -3'
miRNA:   3'- uCgCGGUCGUUg---UACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 23485 0.67 0.999298
Target:  5'- cGgGCCGGCGGaccaAUGGGAg-- -3'
miRNA:   3'- uCgCGGUCGUUg---UACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 88344 0.67 0.99912
Target:  5'- aGGCGCCAucGgGGCugaGGGGUCGc -3'
miRNA:   3'- -UCGCGGU--CgUUGua-CCCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.