miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13465 3' -51.6 NC_003409.1 + 81554 0.66 0.983664
Target:  5'- cCGgCGCuguGGC-CCGGGGAGUGAUggaGCAg -3'
miRNA:   3'- -GUgGCGu--UUGuGGUCCCUCGUUA---UGU- -5'
13465 3' -51.6 NC_003409.1 + 16001 0.66 0.981612
Target:  5'- gCACCGCAAGCAgCAaacGGAGaccUACAc -3'
miRNA:   3'- -GUGGCGUUUGUgGUc--CCUCguuAUGU- -5'
13465 3' -51.6 NC_003409.1 + 67799 0.66 0.979374
Target:  5'- gAUCGCGgugggugcGGCGCgCAGGGGGCGccACGa -3'
miRNA:   3'- gUGGCGU--------UUGUG-GUCCCUCGUuaUGU- -5'
13465 3' -51.6 NC_003409.1 + 135222 0.66 0.979374
Target:  5'- -uUUGCuuuAugACCAGGGAGCugcuacccaGGUACAa -3'
miRNA:   3'- guGGCGu--UugUGGUCCCUCG---------UUAUGU- -5'
13465 3' -51.6 NC_003409.1 + 41433 0.66 0.976939
Target:  5'- gCACCGCAauaaacaucAACAUCAGuGGGGaCAugcUGCAc -3'
miRNA:   3'- -GUGGCGU---------UUGUGGUC-CCUC-GUu--AUGU- -5'
13465 3' -51.6 NC_003409.1 + 3412 0.66 0.976939
Target:  5'- -cCCGCAGGgACCAguGGGGGCc--GCAg -3'
miRNA:   3'- guGGCGUUUgUGGU--CCCUCGuuaUGU- -5'
13465 3' -51.6 NC_003409.1 + 85147 0.66 0.976684
Target:  5'- gCGCCGCAAuguccagugguaaGCacagcuauGCCGGGGAGCcaccggccaucaGAUAUAg -3'
miRNA:   3'- -GUGGCGUU-------------UG--------UGGUCCCUCG------------UUAUGU- -5'
13465 3' -51.6 NC_003409.1 + 45982 0.66 0.974299
Target:  5'- uCAUgGCAAA-ACCAGGGuGCA-UGCGg -3'
miRNA:   3'- -GUGgCGUUUgUGGUCCCuCGUuAUGU- -5'
13465 3' -51.6 NC_003409.1 + 88192 0.66 0.974299
Target:  5'- aGCCcCGAugGCGCCuuagGGGGAGCAGgugcUGCAg -3'
miRNA:   3'- gUGGcGUU--UGUGG----UCCCUCGUU----AUGU- -5'
13465 3' -51.6 NC_003409.1 + 120233 0.66 0.973466
Target:  5'- gGCCGUGAGCGCCAGcaacaugggaucauGGuAGUaaGAUACAg -3'
miRNA:   3'- gUGGCGUUUGUGGUC--------------CC-UCG--UUAUGU- -5'
13465 3' -51.6 NC_003409.1 + 129649 0.67 0.971446
Target:  5'- ---gGCAGAUACCcaGGAGCAGUAUAu -3'
miRNA:   3'- guggCGUUUGUGGucCCUCGUUAUGU- -5'
13465 3' -51.6 NC_003409.1 + 78726 0.67 0.971446
Target:  5'- gGuuGaCGAAgGCCGGGGAGgGAUugAc -3'
miRNA:   3'- gUggC-GUUUgUGGUCCCUCgUUAugU- -5'
13465 3' -51.6 NC_003409.1 + 92848 0.67 0.96507
Target:  5'- aACUGCGAGCcCuCAGGGccCGAUGCAg -3'
miRNA:   3'- gUGGCGUUUGuG-GUCCCucGUUAUGU- -5'
13465 3' -51.6 NC_003409.1 + 93022 0.67 0.96507
Target:  5'- aACUGCGAGCcCuCAGGGccCGAUGCAg -3'
miRNA:   3'- gUGGCGUUUGuG-GUCCCucGUUAUGU- -5'
13465 3' -51.6 NC_003409.1 + 121682 0.67 0.961534
Target:  5'- gCGCCGgGAACACgCAGGuGGCA--GCGg -3'
miRNA:   3'- -GUGGCgUUUGUG-GUCCcUCGUuaUGU- -5'
13465 3' -51.6 NC_003409.1 + 131703 0.67 0.957757
Target:  5'- uGCUGCGGGCgGCCAGGGAcuaccgcuGCGugGCAc -3'
miRNA:   3'- gUGGCGUUUG-UGGUCCCU--------CGUuaUGU- -5'
13465 3' -51.6 NC_003409.1 + 107469 0.68 0.949459
Target:  5'- -uCCGCGggUA-CGGGGAGUAGUAUu -3'
miRNA:   3'- guGGCGUuuGUgGUCCCUCGUUAUGu -5'
13465 3' -51.6 NC_003409.1 + 109833 0.68 0.949459
Target:  5'- cCGCCGCccaAGACGCCGcggcGGGAGgCGGUGg- -3'
miRNA:   3'- -GUGGCG---UUUGUGGU----CCCUC-GUUAUgu -5'
13465 3' -51.6 NC_003409.1 + 33017 0.68 0.949459
Target:  5'- cCGCCGCAAggaGCAgCCugcaGGGGAGCAc---- -3'
miRNA:   3'- -GUGGCGUU---UGU-GG----UCCCUCGUuaugu -5'
13465 3' -51.6 NC_003409.1 + 132440 0.68 0.944931
Target:  5'- ---gGCAAugGCCaugGGGGAGCAGgccUACAa -3'
miRNA:   3'- guggCGUUugUGG---UCCCUCGUU---AUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.