Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13465 | 3' | -51.6 | NC_003409.1 | + | 94749 | 0.68 | 0.940144 |
Target: 5'- gGCCGUcGAUAUCAGGGuggccAGCAGUAa- -3' miRNA: 3'- gUGGCGuUUGUGGUCCC-----UCGUUAUgu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 132440 | 0.68 | 0.944931 |
Target: 5'- ---gGCAAugGCCaugGGGGAGCAGgccUACAa -3' miRNA: 3'- guggCGUUugUGG---UCCCUCGUU---AUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 33017 | 0.68 | 0.949459 |
Target: 5'- cCGCCGCAAggaGCAgCCugcaGGGGAGCAc---- -3' miRNA: 3'- -GUGGCGUU---UGU-GG----UCCCUCGUuaugu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 107469 | 0.68 | 0.949459 |
Target: 5'- -uCCGCGggUA-CGGGGAGUAGUAUu -3' miRNA: 3'- guGGCGUuuGUgGUCCCUCGUUAUGu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 109833 | 0.68 | 0.949459 |
Target: 5'- cCGCCGCccaAGACGCCGcggcGGGAGgCGGUGg- -3' miRNA: 3'- -GUGGCG---UUUGUGGU----CCCUC-GUUAUgu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 131703 | 0.67 | 0.957757 |
Target: 5'- uGCUGCGGGCgGCCAGGGAcuaccgcuGCGugGCAc -3' miRNA: 3'- gUGGCGUUUG-UGGUCCCU--------CGUuaUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 121682 | 0.67 | 0.961534 |
Target: 5'- gCGCCGgGAACACgCAGGuGGCA--GCGg -3' miRNA: 3'- -GUGGCgUUUGUG-GUCCcUCGUuaUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 92848 | 0.67 | 0.96507 |
Target: 5'- aACUGCGAGCcCuCAGGGccCGAUGCAg -3' miRNA: 3'- gUGGCGUUUGuG-GUCCCucGUUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 93022 | 0.67 | 0.96507 |
Target: 5'- aACUGCGAGCcCuCAGGGccCGAUGCAg -3' miRNA: 3'- gUGGCGUUUGuG-GUCCCucGUUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 78726 | 0.67 | 0.971446 |
Target: 5'- gGuuGaCGAAgGCCGGGGAGgGAUugAc -3' miRNA: 3'- gUggC-GUUUgUGGUCCCUCgUUAugU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 129649 | 0.67 | 0.971446 |
Target: 5'- ---gGCAGAUACCcaGGAGCAGUAUAu -3' miRNA: 3'- guggCGUUUGUGGucCCUCGUUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 120233 | 0.66 | 0.973466 |
Target: 5'- gGCCGUGAGCGCCAGcaacaugggaucauGGuAGUaaGAUACAg -3' miRNA: 3'- gUGGCGUUUGUGGUC--------------CC-UCG--UUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 45982 | 0.66 | 0.974299 |
Target: 5'- uCAUgGCAAA-ACCAGGGuGCA-UGCGg -3' miRNA: 3'- -GUGgCGUUUgUGGUCCCuCGUuAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 88192 | 0.66 | 0.974299 |
Target: 5'- aGCCcCGAugGCGCCuuagGGGGAGCAGgugcUGCAg -3' miRNA: 3'- gUGGcGUU--UGUGG----UCCCUCGUU----AUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 85147 | 0.66 | 0.976684 |
Target: 5'- gCGCCGCAAuguccagugguaaGCacagcuauGCCGGGGAGCcaccggccaucaGAUAUAg -3' miRNA: 3'- -GUGGCGUU-------------UG--------UGGUCCCUCG------------UUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 3412 | 0.66 | 0.976939 |
Target: 5'- -cCCGCAGGgACCAguGGGGGCc--GCAg -3' miRNA: 3'- guGGCGUUUgUGGU--CCCUCGuuaUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 41433 | 0.66 | 0.976939 |
Target: 5'- gCACCGCAauaaacaucAACAUCAGuGGGGaCAugcUGCAc -3' miRNA: 3'- -GUGGCGU---------UUGUGGUC-CCUC-GUu--AUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 135222 | 0.66 | 0.979374 |
Target: 5'- -uUUGCuuuAugACCAGGGAGCugcuacccaGGUACAa -3' miRNA: 3'- guGGCGu--UugUGGUCCCUCG---------UUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 67799 | 0.66 | 0.979374 |
Target: 5'- gAUCGCGgugggugcGGCGCgCAGGGGGCGccACGa -3' miRNA: 3'- gUGGCGU--------UUGUG-GUCCCUCGUuaUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 16001 | 0.66 | 0.981612 |
Target: 5'- gCACCGCAAGCAgCAaacGGAGaccUACAc -3' miRNA: 3'- -GUGGCGUUUGUgGUc--CCUCguuAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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