Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1373 | 5' | -54 | NC_001335.1 | + | 24426 | 0.66 | 0.808861 |
Target: 5'- --cCGCUCAGGcAGGugCGA--CGACCa -3' miRNA: 3'- guaGUGGGUCC-UCUugGCUcuGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 6741 | 0.66 | 0.806006 |
Target: 5'- -uUCugCCAGGAcGGGCCGAugaugugagggggaGACGGg- -3' miRNA: 3'- guAGugGGUCCU-CUUGGCU--------------CUGCUgg -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 50641 | 0.66 | 0.773584 |
Target: 5'- aGUCACCUGGGcaccuaacGCCGAcuggggcgaagacauGACGGCCa -3' miRNA: 3'- gUAGUGGGUCCucu-----UGGCU---------------CUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 7403 | 0.66 | 0.77961 |
Target: 5'- aCAUC-CCCGGc---ACCGAGACGgucGCCg -3' miRNA: 3'- -GUAGuGGGUCcucuUGGCUCUGC---UGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 31716 | 0.66 | 0.769537 |
Target: 5'- --aCGCCCGauGGuuGcCCGuGACGACCa -3' miRNA: 3'- guaGUGGGU--CCucUuGGCuCUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 43195 | 0.66 | 0.811698 |
Target: 5'- uCGUCACCCGGcGAGuuGCCGgucuuguagucccGGACucgaagcucaccguuGACCa -3' miRNA: 3'- -GUAGUGGGUC-CUCu-UGGC-------------UCUG---------------CUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 41312 | 0.67 | 0.707596 |
Target: 5'- --aCACCgaaCGGGAGAGCUGGGugaacgcaucagaguCGGCCg -3' miRNA: 3'- guaGUGG---GUCCUCUUGGCUCu--------------GCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 21469 | 0.67 | 0.706517 |
Target: 5'- -cUCACagaCCAGGAGAACagaGcGAUGAUCg -3' miRNA: 3'- guAGUG---GGUCCUCUUGg--CuCUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 20479 | 0.67 | 0.738512 |
Target: 5'- gCAUCucgGCCCuGGuGAACauCGGuGGCGACCu -3' miRNA: 3'- -GUAG---UGGGuCCuCUUG--GCU-CUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 14691 | 0.67 | 0.758293 |
Target: 5'- gCAUCacGCCCAcaaggcuGGAGuucGCCGcGACGACg -3' miRNA: 3'- -GUAG--UGGGU-------CCUCu--UGGCuCUGCUGg -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 7598 | 0.67 | 0.748977 |
Target: 5'- -uUCugCgGGGGGAucucggagACCGGGGuguCGGCCg -3' miRNA: 3'- guAGugGgUCCUCU--------UGGCUCU---GCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 23284 | 0.67 | 0.746893 |
Target: 5'- uCGUCACUCGGGuGA-CCGAGuucggagugcccUGGCCg -3' miRNA: 3'- -GUAGUGGGUCCuCUuGGCUCu-----------GCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 12120 | 0.67 | 0.745849 |
Target: 5'- gGUCGCUCAGGAuggucgGAcgggccacaauccgACCGAGGCGGa- -3' miRNA: 3'- gUAGUGGGUCCU------CU--------------UGGCUCUGCUgg -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 40316 | 0.67 | 0.727939 |
Target: 5'- --cCACCgAGGAaaGGAUCcAGAUGACCa -3' miRNA: 3'- guaGUGGgUCCU--CUUGGcUCUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 12159 | 0.68 | 0.651878 |
Target: 5'- aGUCACCCuGGu-AGCCGA--CGACCg -3' miRNA: 3'- gUAGUGGGuCCucUUGGCUcuGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 45683 | 0.68 | 0.661785 |
Target: 5'- --cUACCCaacuaggAGGAGAccGCCGAGAUGaACUa -3' miRNA: 3'- guaGUGGG-------UCCUCU--UGGCUCUGC-UGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 32862 | 0.68 | 0.661785 |
Target: 5'- cCGUCGCCgacggcgcggucuCAGGcucaGGAGCCGGGGcCGGCUc -3' miRNA: 3'- -GUAGUGG-------------GUCC----UCUUGGCUCU-GCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 37393 | 0.68 | 0.662885 |
Target: 5'- -uUCACCCcGGAGGacgugGCCGucauGAUGAUCc -3' miRNA: 3'- guAGUGGGuCCUCU-----UGGCu---CUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 33662 | 0.68 | 0.673864 |
Target: 5'- ---gGCCaaaUAGGAGGcaacuCCGAGAUGACCc -3' miRNA: 3'- guagUGG---GUCCUCUu----GGCUCUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 38103 | 0.68 | 0.695691 |
Target: 5'- gAUCugCgaGGGAGAACuCGAcACGAUCa -3' miRNA: 3'- gUAGugGg-UCCUCUUG-GCUcUGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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