miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1373 5' -54 NC_001335.1 + 22331 0.8 0.151529
Target:  5'- gCAUCACCCcggaGGGGGAGCUGAu-CGACCg -3'
miRNA:   3'- -GUAGUGGG----UCCUCUUGGCUcuGCUGG- -5'
1373 5' -54 NC_001335.1 + 14691 0.67 0.758293
Target:  5'- gCAUCacGCCCAcaaggcuGGAGuucGCCGcGACGACg -3'
miRNA:   3'- -GUAG--UGGGU-------CCUCu--UGGCuCUGCUGg -5'
1373 5' -54 NC_001335.1 + 7403 0.66 0.77961
Target:  5'- aCAUC-CCCGGc---ACCGAGACGgucGCCg -3'
miRNA:   3'- -GUAGuGGGUCcucuUGGCUCUGC---UGG- -5'
1373 5' -54 NC_001335.1 + 43195 0.66 0.811698
Target:  5'- uCGUCACCCGGcGAGuuGCCGgucuuguagucccGGACucgaagcucaccguuGACCa -3'
miRNA:   3'- -GUAGUGGGUC-CUCu-UGGC-------------UCUG---------------CUGG- -5'
1373 5' -54 NC_001335.1 + 27412 0.72 0.439636
Target:  5'- gCGUCugCCucGGAGAGgUGGGACG-CCa -3'
miRNA:   3'- -GUAGugGGu-CCUCUUgGCUCUGCuGG- -5'
1373 5' -54 NC_001335.1 + 41915 0.71 0.489763
Target:  5'- uGUUGCCCAGGAucAGCCGuuuGCGGCCu -3'
miRNA:   3'- gUAGUGGGUCCUc-UUGGCuc-UGCUGG- -5'
1373 5' -54 NC_001335.1 + 7601 0.7 0.57487
Target:  5'- uCAUCGCCCgAGGcGAcuccaccuggcuGCCGAuaGACGACa -3'
miRNA:   3'- -GUAGUGGG-UCCuCU------------UGGCU--CUGCUGg -5'
1373 5' -54 NC_001335.1 + 7734 0.7 0.57487
Target:  5'- -cUCACCgCAGGAaugGAACCGgugccAGGuCGACCu -3'
miRNA:   3'- guAGUGG-GUCCU---CUUGGC-----UCU-GCUGG- -5'
1373 5' -54 NC_001335.1 + 33662 0.68 0.673864
Target:  5'- ---gGCCaaaUAGGAGGcaacuCCGAGAUGACCc -3'
miRNA:   3'- guagUGG---GUCCUCUu----GGCUCUGCUGG- -5'
1373 5' -54 NC_001335.1 + 20479 0.67 0.738512
Target:  5'- gCAUCucgGCCCuGGuGAACauCGGuGGCGACCu -3'
miRNA:   3'- -GUAG---UGGGuCCuCUUG--GCU-CUGCUGG- -5'
1373 5' -54 NC_001335.1 + 15834 0.68 0.684802
Target:  5'- --aCACCaAGGAGuuccGCCGGGAacucaaGACCg -3'
miRNA:   3'- guaGUGGgUCCUCu---UGGCUCUg-----CUGG- -5'
1373 5' -54 NC_001335.1 + 32862 0.68 0.661785
Target:  5'- cCGUCGCCgacggcgcggucuCAGGcucaGGAGCCGGGGcCGGCUc -3'
miRNA:   3'- -GUAGUGG-------------GUCC----UCUUGGCUCU-GCUGG- -5'
1373 5' -54 NC_001335.1 + 24304 0.77 0.239376
Target:  5'- uCAUCGCCauccUAGGAGucguguGACCGAGACgGGCCa -3'
miRNA:   3'- -GUAGUGG----GUCCUC------UUGGCUCUG-CUGG- -5'
1373 5' -54 NC_001335.1 + 21469 0.67 0.706517
Target:  5'- -cUCACagaCCAGGAGAACagaGcGAUGAUCg -3'
miRNA:   3'- guAGUG---GGUCCUCUUGg--CuCUGCUGG- -5'
1373 5' -54 NC_001335.1 + 26582 0.73 0.374674
Target:  5'- gAUCAgCCGGGGaccGAGCCGA-ACGGCCu -3'
miRNA:   3'- gUAGUgGGUCCU---CUUGGCUcUGCUGG- -5'
1373 5' -54 NC_001335.1 + 40664 0.69 0.629818
Target:  5'- ---gGCCCAGGAucGCCGAuccGGCGAUg -3'
miRNA:   3'- guagUGGGUCCUcuUGGCU---CUGCUGg -5'
1373 5' -54 NC_001335.1 + 41312 0.67 0.707596
Target:  5'- --aCACCgaaCGGGAGAGCUGGGugaacgcaucagaguCGGCCg -3'
miRNA:   3'- guaGUGG---GUCCUCUUGGCUCu--------------GCUGG- -5'
1373 5' -54 NC_001335.1 + 31716 0.66 0.769537
Target:  5'- --aCGCCCGauGGuuGcCCGuGACGACCa -3'
miRNA:   3'- guaGUGGGU--CCucUuGGCuCUGCUGG- -5'
1373 5' -54 NC_001335.1 + 42002 0.73 0.388941
Target:  5'- uGUCACCUAGGAuccaGACCGugucguccuugccGACGACCg -3'
miRNA:   3'- gUAGUGGGUCCUc---UUGGCu------------CUGCUGG- -5'
1373 5' -54 NC_001335.1 + 4148 0.7 0.563988
Target:  5'- aCcgCACCCAucagagauGGuGGGCC-AGACGGCCu -3'
miRNA:   3'- -GuaGUGGGU--------CCuCUUGGcUCUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.