miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1373 5' -54 NC_001335.1 + 4148 0.7 0.563988
Target:  5'- aCcgCACCCAucagagauGGuGGGCC-AGACGGCCu -3'
miRNA:   3'- -GuaGUGGGU--------CCuCUUGGcUCUGCUGG- -5'
1373 5' -54 NC_001335.1 + 5565 0.7 0.563988
Target:  5'- ---uGCCCAGcAGuGCCGGGGCGGCg -3'
miRNA:   3'- guagUGGGUCcUCuUGGCUCUGCUGg -5'
1373 5' -54 NC_001335.1 + 6741 0.66 0.806006
Target:  5'- -uUCugCCAGGAcGGGCCGAugaugugagggggaGACGGg- -3'
miRNA:   3'- guAGugGGUCCU-CUUGGCU--------------CUGCUgg -5'
1373 5' -54 NC_001335.1 + 7403 0.66 0.77961
Target:  5'- aCAUC-CCCGGc---ACCGAGACGgucGCCg -3'
miRNA:   3'- -GUAGuGGGUCcucuUGGCUCUGC---UGG- -5'
1373 5' -54 NC_001335.1 + 7598 0.67 0.748977
Target:  5'- -uUCugCgGGGGGAucucggagACCGGGGuguCGGCCg -3'
miRNA:   3'- guAGugGgUCCUCU--------UGGCUCU---GCUGG- -5'
1373 5' -54 NC_001335.1 + 7601 0.7 0.57487
Target:  5'- uCAUCGCCCgAGGcGAcuccaccuggcuGCCGAuaGACGACa -3'
miRNA:   3'- -GUAGUGGG-UCCuCU------------UGGCU--CUGCUGg -5'
1373 5' -54 NC_001335.1 + 7734 0.7 0.57487
Target:  5'- -cUCACCgCAGGAaugGAACCGgugccAGGuCGACCu -3'
miRNA:   3'- guAGUGG-GUCCU---CUUGGC-----UCU-GCUGG- -5'
1373 5' -54 NC_001335.1 + 8706 0.7 0.542397
Target:  5'- gCAUCGCCgAGGcGGAAacCCucGACGGCCu -3'
miRNA:   3'- -GUAGUGGgUCC-UCUU--GGcuCUGCUGG- -5'
1373 5' -54 NC_001335.1 + 11493 0.68 0.684802
Target:  5'- -uUCGCCCAGaAGAucCCGAugggcACGACCg -3'
miRNA:   3'- guAGUGGGUCcUCUu-GGCUc----UGCUGG- -5'
1373 5' -54 NC_001335.1 + 12120 0.67 0.745849
Target:  5'- gGUCGCUCAGGAuggucgGAcgggccacaauccgACCGAGGCGGa- -3'
miRNA:   3'- gUAGUGGGUCCU------CU--------------UGGCUCUGCUgg -5'
1373 5' -54 NC_001335.1 + 12159 0.68 0.651878
Target:  5'- aGUCACCCuGGu-AGCCGA--CGACCg -3'
miRNA:   3'- gUAGUGGGuCCucUUGGCUcuGCUGG- -5'
1373 5' -54 NC_001335.1 + 14691 0.67 0.758293
Target:  5'- gCAUCacGCCCAcaaggcuGGAGuucGCCGcGACGACg -3'
miRNA:   3'- -GUAG--UGGGU-------CCUCu--UGGCuCUGCUGg -5'
1373 5' -54 NC_001335.1 + 15834 0.68 0.684802
Target:  5'- --aCACCaAGGAGuuccGCCGGGAacucaaGACCg -3'
miRNA:   3'- guaGUGGgUCCUCu---UGGCUCUg-----CUGG- -5'
1373 5' -54 NC_001335.1 + 16116 0.72 0.429963
Target:  5'- --cCGCCgAGGAGAccuCCGAGGaGACCu -3'
miRNA:   3'- guaGUGGgUCCUCUu--GGCUCUgCUGG- -5'
1373 5' -54 NC_001335.1 + 20479 0.67 0.738512
Target:  5'- gCAUCucgGCCCuGGuGAACauCGGuGGCGACCu -3'
miRNA:   3'- -GUAG---UGGGuCCuCUUG--GCU-CUGCUGG- -5'
1373 5' -54 NC_001335.1 + 21469 0.67 0.706517
Target:  5'- -cUCACagaCCAGGAGAACagaGcGAUGAUCg -3'
miRNA:   3'- guAGUG---GGUCCUCUUGg--CuCUGCUGG- -5'
1373 5' -54 NC_001335.1 + 22331 0.8 0.151529
Target:  5'- gCAUCACCCcggaGGGGGAGCUGAu-CGACCg -3'
miRNA:   3'- -GUAGUGGG----UCCUCUUGGCUcuGCUGG- -5'
1373 5' -54 NC_001335.1 + 23284 0.67 0.746893
Target:  5'- uCGUCACUCGGGuGA-CCGAGuucggagugcccUGGCCg -3'
miRNA:   3'- -GUAGUGGGUCCuCUuGGCUCu-----------GCUGG- -5'
1373 5' -54 NC_001335.1 + 24304 0.77 0.239376
Target:  5'- uCAUCGCCauccUAGGAGucguguGACCGAGACgGGCCa -3'
miRNA:   3'- -GUAGUGG----GUCCUC------UUGGCUCUG-CUGG- -5'
1373 5' -54 NC_001335.1 + 24426 0.66 0.808861
Target:  5'- --cCGCUCAGGcAGGugCGA--CGACCa -3'
miRNA:   3'- guaGUGGGUCC-UCUugGCUcuGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.