Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1373 | 5' | -54 | NC_001335.1 | + | 26950 | 1.11 | 0.001002 |
Target: 5'- uCAUCACCCAGGAGAACCGAGACGACCu -3' miRNA: 3'- -GUAGUGGGUCCUCUUGGCUCUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 22331 | 0.8 | 0.151529 |
Target: 5'- gCAUCACCCcggaGGGGGAGCUGAu-CGACCg -3' miRNA: 3'- -GUAGUGGG----UCCUCUUGGCUcuGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 24304 | 0.77 | 0.239376 |
Target: 5'- uCAUCGCCauccUAGGAGucguguGACCGAGACgGGCCa -3' miRNA: 3'- -GUAGUGG----GUCCUC------UUGGCUCUG-CUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 31960 | 0.75 | 0.293773 |
Target: 5'- --cCACCCc-GAcGACCGAGACGACCu -3' miRNA: 3'- guaGUGGGucCUcUUGGCUCUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 26582 | 0.73 | 0.374674 |
Target: 5'- gAUCAgCCGGGGaccGAGCCGA-ACGGCCu -3' miRNA: 3'- gUAGUgGGUCCU---CUUGGCUcUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 42002 | 0.73 | 0.388941 |
Target: 5'- uGUCACCUAGGAuccaGACCGugucguccuugccGACGACCg -3' miRNA: 3'- gUAGUGGGUCCUc---UUGGCu------------CUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 16116 | 0.72 | 0.429963 |
Target: 5'- --cCGCCgAGGAGAccuCCGAGGaGACCu -3' miRNA: 3'- guaGUGGgUCCUCUu--GGCUCUgCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 27412 | 0.72 | 0.439636 |
Target: 5'- gCGUCugCCucGGAGAGgUGGGACG-CCa -3' miRNA: 3'- -GUAGugGGu-CCUCUUgGCUCUGCuGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 41915 | 0.71 | 0.489763 |
Target: 5'- uGUUGCCCAGGAucAGCCGuuuGCGGCCu -3' miRNA: 3'- gUAGUGGGUCCUc-UUGGCuc-UGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 29555 | 0.7 | 0.530638 |
Target: 5'- cCAUCGCUCAGGAGGcuaagaaGCUGGGGaaguggcggaaGACCu -3' miRNA: 3'- -GUAGUGGGUCCUCU-------UGGCUCUg----------CUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 46479 | 0.7 | 0.530638 |
Target: 5'- aAUCGgCCggcGGGGGAgcguuggugcucuACCGAGGCGACa -3' miRNA: 3'- gUAGUgGG---UCCUCU-------------UGGCUCUGCUGg -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 8706 | 0.7 | 0.542397 |
Target: 5'- gCAUCGCCgAGGcGGAAacCCucGACGGCCu -3' miRNA: 3'- -GUAGUGGgUCC-UCUU--GGcuCUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 4148 | 0.7 | 0.563988 |
Target: 5'- aCcgCACCCAucagagauGGuGGGCC-AGACGGCCu -3' miRNA: 3'- -GuaGUGGGU--------CCuCUUGGcUCUGCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 5565 | 0.7 | 0.563988 |
Target: 5'- ---uGCCCAGcAGuGCCGGGGCGGCg -3' miRNA: 3'- guagUGGGUCcUCuUGGCUCUGCUGg -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 7734 | 0.7 | 0.57487 |
Target: 5'- -cUCACCgCAGGAaugGAACCGgugccAGGuCGACCu -3' miRNA: 3'- guAGUGG-GUCCU---CUUGGC-----UCU-GCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 7601 | 0.7 | 0.57487 |
Target: 5'- uCAUCGCCCgAGGcGAcuccaccuggcuGCCGAuaGACGACa -3' miRNA: 3'- -GUAGUGGG-UCCuCU------------UGGCU--CUGCUGg -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 33670 | 0.69 | 0.618787 |
Target: 5'- -uUCACCCaguucuugcGGGAGAuggccGCUGAGGuCGACUc -3' miRNA: 3'- guAGUGGG---------UCCUCU-----UGGCUCU-GCUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 40664 | 0.69 | 0.629818 |
Target: 5'- ---gGCCCAGGAucGCCGAuccGGCGAUg -3' miRNA: 3'- guagUGGGUCCUcuUGGCU---CUGCUGg -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 26740 | 0.69 | 0.640852 |
Target: 5'- gCAUcCAUCCAGGAGA-CCGcuGACuACCu -3' miRNA: 3'- -GUA-GUGGGUCCUCUuGGCu-CUGcUGG- -5' |
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1373 | 5' | -54 | NC_001335.1 | + | 12159 | 0.68 | 0.651878 |
Target: 5'- aGUCACCCuGGu-AGCCGA--CGACCg -3' miRNA: 3'- gUAGUGGGuCCucUUGGCUcuGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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