miRNA display CGI


Results 21 - 40 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 33513 0.69 0.630047
Target:  5'- cGGCCUgcuggcgugUGCCAGCucaACGcCGGCUGCAa- -3'
miRNA:   3'- aCCGGA---------GCGGUCG---UGU-GUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 220826 0.69 0.630047
Target:  5'- -aGCCgUCGCCGGUACGCucAGCggagUGCGGUg -3'
miRNA:   3'- acCGG-AGCGGUCGUGUG--UCG----ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 191886 0.71 0.541812
Target:  5'- -cGCUUCGCC-GCGCACAGCaaacaGCAGa -3'
miRNA:   3'- acCGGAGCGGuCGUGUGUCGa----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 154745 0.72 0.476104
Target:  5'- aGGUCUUGCCGGCGC-CGGCggUGcCGGUg -3'
miRNA:   3'- aCCGGAGCGGUCGUGuGUCG--AC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 218804 0.69 0.663669
Target:  5'- cGGCCUCGCCuGGCAgcucuccugcaccuuCACGGuCUGCc-- -3'
miRNA:   3'- aCCGGAGCGG-UCGU---------------GUGUC-GACGuca -5'
13934 5' -59.7 NC_003521.1 + 136919 0.69 0.649841
Target:  5'- cGGCggCGCgGGuCGCACGGCguUGCGGUa -3'
miRNA:   3'- aCCGgaGCGgUC-GUGUGUCG--ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 85663 0.7 0.610258
Target:  5'- aGGCCUgcUGCCGGCcaaGCGCAGCcGCuuGUg -3'
miRNA:   3'- aCCGGA--GCGGUCG---UGUGUCGaCGu-CA- -5'
13934 5' -59.7 NC_003521.1 + 84954 0.74 0.381718
Target:  5'- cGGCCUggagGUguGCACGCAGCUGCuGg -3'
miRNA:   3'- aCCGGAg---CGguCGUGUGUCGACGuCa -5'
13934 5' -59.7 NC_003521.1 + 63419 0.69 0.649841
Target:  5'- cGGCgcgucgaUCGUCAGCccGCGCAGCUGCu-- -3'
miRNA:   3'- aCCGg------AGCGGUCG--UGUGUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 144478 0.78 0.228108
Target:  5'- aGGCaggCGUCGGCGCACuGCUGCAGc -3'
miRNA:   3'- aCCGga-GCGGUCGUGUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 74449 0.7 0.610258
Target:  5'- gGGCCgcgCGCCgGGCGcCGCGGC-GCAGc -3'
miRNA:   3'- aCCGGa--GCGG-UCGU-GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 124425 0.69 0.639947
Target:  5'- aGGCgcuaUCGCCuGCACGgCAGCggcgGCGGa -3'
miRNA:   3'- aCCGg---AGCGGuCGUGU-GUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 127027 0.7 0.600383
Target:  5'- gGGCCU-GCCGGacuuCACGucGCUGCAGUu -3'
miRNA:   3'- aCCGGAgCGGUCgu--GUGU--CGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 150973 0.71 0.551464
Target:  5'- cGGCCgagaGCCAGUcgccgccgGCGCAGCaGCAGc -3'
miRNA:   3'- aCCGGag--CGGUCG--------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 59048 0.71 0.532217
Target:  5'- aUGcGUCgUCGCCGGCGCGCGccgccCUGCAGUg -3'
miRNA:   3'- -AC-CGG-AGCGGUCGUGUGUc----GACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 117158 0.72 0.476104
Target:  5'- gGGUCUccCGCCGGCGCGCcGCcGCAGc -3'
miRNA:   3'- aCCGGA--GCGGUCGUGUGuCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 213852 0.68 0.679415
Target:  5'- cUGGUCaUCGCCGGCugcuacgugGCGCuGCUGuCGGUc -3'
miRNA:   3'- -ACCGG-AGCGGUCG---------UGUGuCGAC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 52970 0.69 0.669583
Target:  5'- cGGgCUCacuuuCUAGCGCGCGGaCUGCAGa -3'
miRNA:   3'- aCCgGAGc----GGUCGUGUGUC-GACGUCa -5'
13934 5' -59.7 NC_003521.1 + 149200 0.69 0.659722
Target:  5'- -aGCacacgCGCCAGCACGgcGCUGCGGUg -3'
miRNA:   3'- acCGga---GCGGUCGUGUguCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 130266 0.69 0.649841
Target:  5'- cGGCCguugcgCGCCGccGCcgGCGCAGCgGCAGc -3'
miRNA:   3'- aCCGGa-----GCGGU--CG--UGUGUCGaCGUCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.