miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 71290 0.66 0.994346
Target:  5'- cGCGGC-ACGGGCcccuGGGGCAccagcaccugggGCGgcGGCg -3'
miRNA:   3'- -UGUCGcUGCCUG----CCUUGU------------UGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 5653 0.66 0.994346
Target:  5'- cAUGGCGGCGGAgggUGGGGgGuCGAgacacgGGCg -3'
miRNA:   3'- -UGUCGCUGCCU---GCCUUgUuGCUa-----CCG- -5'
13935 3' -53.3 NC_003521.1 + 119800 0.66 0.994346
Target:  5'- cCGGCG-CcaGCGGGGCGacACGGUGGUg -3'
miRNA:   3'- uGUCGCuGccUGCCUUGU--UGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 216285 0.66 0.994346
Target:  5'- cCAGCucGugGaGCGG-ACGACGuUGGCg -3'
miRNA:   3'- uGUCG--CugCcUGCCuUGUUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 67571 0.66 0.994346
Target:  5'- -aGGCGGCGGgccccGCGGGcCAgagucgccaacACGcgGGCa -3'
miRNA:   3'- ugUCGCUGCC-----UGCCUuGU-----------UGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 221352 0.66 0.994346
Target:  5'- cCAGCG-UGG-CGGuGACGGCGucgGGCu -3'
miRNA:   3'- uGUCGCuGCCuGCC-UUGUUGCua-CCG- -5'
13935 3' -53.3 NC_003521.1 + 86210 0.66 0.994346
Target:  5'- -aGGCGAaGGGCGGcGGC-ACGccGGCg -3'
miRNA:   3'- ugUCGCUgCCUGCC-UUGuUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 128171 0.66 0.994346
Target:  5'- -gGGCGugGGGuCGu-GCAGCaccgGGUGGCa -3'
miRNA:   3'- ugUCGCugCCU-GCcuUGUUG----CUACCG- -5'
13935 3' -53.3 NC_003521.1 + 75103 0.66 0.994346
Target:  5'- uGCAGCGugaGGcGCGGGACGccgucGCGcucGGCg -3'
miRNA:   3'- -UGUCGCug-CC-UGCCUUGU-----UGCua-CCG- -5'
13935 3' -53.3 NC_003521.1 + 86186 0.66 0.994346
Target:  5'- cCAGCGACucGCGG-GCcACGGUGGa -3'
miRNA:   3'- uGUCGCUGccUGCCuUGuUGCUACCg -5'
13935 3' -53.3 NC_003521.1 + 106647 0.66 0.994346
Target:  5'- cCGaCGACGGA-GGAgGCGGCGGagaUGGCg -3'
miRNA:   3'- uGUcGCUGCCUgCCU-UGUUGCU---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 222767 0.66 0.994346
Target:  5'- cACGGCGuCGGugGGGuCGGCGcagaGGa -3'
miRNA:   3'- -UGUCGCuGCCugCCUuGUUGCua--CCg -5'
13935 3' -53.3 NC_003521.1 + 192395 0.66 0.994346
Target:  5'- --cGCgGACGccGACGGAGCcGACGA-GGCc -3'
miRNA:   3'- uguCG-CUGC--CUGCCUUG-UUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 31162 0.66 0.994266
Target:  5'- cGCAGCGAgaugcaaCGGuaguCGGGGauGCGGUGGa -3'
miRNA:   3'- -UGUCGCU-------GCCu---GCCUUguUGCUACCg -5'
13935 3' -53.3 NC_003521.1 + 117694 0.66 0.993502
Target:  5'- uACGGgGAgGGAUGGugaggauACGcgGGCa -3'
miRNA:   3'- -UGUCgCUgCCUGCCuugu---UGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 97522 0.66 0.993502
Target:  5'- -gGGCGACc-ACGGAGagaGACGAcGGCg -3'
miRNA:   3'- ugUCGCUGccUGCCUUg--UUGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 37354 0.66 0.993502
Target:  5'- uGCAGaCGACGGAgCGcuGCuucuUGGUGGCc -3'
miRNA:   3'- -UGUC-GCUGCCU-GCcuUGuu--GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 118351 0.66 0.993502
Target:  5'- -gGGCGACGG-CGccGC--CGAUGGCu -3'
miRNA:   3'- ugUCGCUGCCuGCcuUGuuGCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 164543 0.66 0.993502
Target:  5'- uGCGGUGGCuGuccaGGAGCGGCGGUccgcgccuccGGCa -3'
miRNA:   3'- -UGUCGCUGcCug--CCUUGUUGCUA----------CCG- -5'
13935 3' -53.3 NC_003521.1 + 136693 0.66 0.993502
Target:  5'- aGCAG-GGCGGGCccGAGCAggacgccgccgAgGAUGGCa -3'
miRNA:   3'- -UGUCgCUGCCUGc-CUUGU-----------UgCUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.