miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 173033 0.68 0.671142
Target:  5'- ----cGGcGcCCCCGGUggcagccagaaUGCCGGGcCCCg -3'
miRNA:   3'- auuuuCC-C-GGGGCCA-----------GCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 63809 0.71 0.501475
Target:  5'- cGAGGGcGGCUCCGuGaCGCUGGG-CCCa -3'
miRNA:   3'- aUUUUC-CCGGGGC-CaGCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 225959 0.77 0.228085
Target:  5'- --cGAGGGCgCCUGGgagCGCCuGGACCCc -3'
miRNA:   3'- auuUUCCCG-GGGCCa--GCGGcCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 39709 0.68 0.661609
Target:  5'- -----cGGCCCuCGG-CGCCGGG-CUCg -3'
miRNA:   3'- auuuucCCGGG-GCCaGCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 68691 0.78 0.203309
Target:  5'- -uGAGGGGCgCCGGcggagccgUCGCCgcGGGACCCg -3'
miRNA:   3'- auUUUCCCGgGGCC--------AGCGG--CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 44132 0.66 0.789856
Target:  5'- ----uGGGCgacggCCCGGgagccgGCCGGGGCgCCu -3'
miRNA:   3'- auuuuCCCG-----GGGCCag----CGGCCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 153342 0.75 0.297983
Target:  5'- ----uGGGCCCCGG-C-CCGGGcCCCg -3'
miRNA:   3'- auuuuCCCGGGGCCaGcGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 134040 0.66 0.787291
Target:  5'- -uGGAGGaaaaacuccgccgcGuCCCCGGaaUCGCCGGG-CCUg -3'
miRNA:   3'- auUUUCC--------------C-GGGGCC--AGCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 122498 0.66 0.781262
Target:  5'- ---uGGcGGCgCUCaGUCGCCGGcACCCg -3'
miRNA:   3'- auuuUC-CCG-GGGcCAGCGGCCcUGGG- -5'
13936 3' -61.2 NC_003521.1 + 116995 0.67 0.763731
Target:  5'- -uGAAGGGCgCCGacu-CCGGGACCg -3'
miRNA:   3'- auUUUCCCGgGGCcagcGGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 191777 0.67 0.754807
Target:  5'- --cGAGcGCCCCGGUCGCauucgacgucucUGGGAaugCCg -3'
miRNA:   3'- auuUUCcCGGGGCCAGCG------------GCCCUg--GG- -5'
13936 3' -61.2 NC_003521.1 + 29703 0.67 0.733937
Target:  5'- aUGAAcuGGCCCaCGcgcugguuguagcuGUCaCCGGGGCCCg -3'
miRNA:   3'- -AUUUucCCGGG-GC--------------CAGcGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 90412 0.68 0.690117
Target:  5'- gAAGGGGGCguaucaguaUCCGG--GCUGGGAUCCg -3'
miRNA:   3'- aUUUUCCCG---------GGGCCagCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 137469 0.69 0.652056
Target:  5'- aAGAAGGGCguCCCGGcCGCCgacuccagcgGGGGCa- -3'
miRNA:   3'- aUUUUCCCG--GGGCCaGCGG----------CCCUGgg -5'
13936 3' -61.2 NC_003521.1 + 165221 0.7 0.556815
Target:  5'- aAAGAGGGCCCucuccggcgacgCGaGcCGCCggaggaGGGGCCCg -3'
miRNA:   3'- aUUUUCCCGGG------------GC-CaGCGG------CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 63323 0.71 0.519679
Target:  5'- ---cGGGGUCgCGGUCGUcgccagggccgaCGGGGCCUg -3'
miRNA:   3'- auuuUCCCGGgGCCAGCG------------GCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 227175 0.71 0.510544
Target:  5'- gGAGGGGGCCgcggaggccgcgCUGGcCGCCGuGGugCCc -3'
miRNA:   3'- aUUUUCCCGG------------GGCCaGCGGC-CCugGG- -5'
13936 3' -61.2 NC_003521.1 + 138342 0.72 0.469447
Target:  5'- cUGGGAGGGCCagcgCCucagcuguccgcggcGGUCGCgGGcGACCCa -3'
miRNA:   3'- -AUUUUCCCGG----GG---------------CCAGCGgCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 141573 0.73 0.415251
Target:  5'- gAAGAGGGCUCCGGggCGCC---GCCCg -3'
miRNA:   3'- aUUUUCCCGGGGCCa-GCGGcccUGGG- -5'
13936 3' -61.2 NC_003521.1 + 111623 0.74 0.383388
Target:  5'- ------aGUCCCGG-CGCCGGGAUCCg -3'
miRNA:   3'- auuuuccCGGGGCCaGCGGCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.