Results 21 - 40 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13936 | 3' | -61.2 | NC_003521.1 | + | 63323 | 0.71 | 0.519679 |
Target: 5'- ---cGGGGUCgCGGUCGUcgccagggccgaCGGGGCCUg -3' miRNA: 3'- auuuUCCCGGgGCCAGCG------------GCCCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 227175 | 0.71 | 0.510544 |
Target: 5'- gGAGGGGGCCgcggaggccgcgCUGGcCGCCGuGGugCCc -3' miRNA: 3'- aUUUUCCCGG------------GGCCaGCGGC-CCugGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 150739 | 0.73 | 0.406327 |
Target: 5'- -uGAAGGGCCCCaccaGGcgcUCGCCGccccagaccaggaGGACCCc -3' miRNA: 3'- auUUUCCCGGGG----CC---AGCGGC-------------CCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 36292 | 0.77 | 0.255368 |
Target: 5'- gAAGAGGGCCaagaCGGUCG-UGGGGCCg -3' miRNA: 3'- aUUUUCCCGGg---GCCAGCgGCCCUGGg -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 4945 | 0.68 | 0.671142 |
Target: 5'- cGGGGGGGaCCgCGcgacGUCGCCggcGGGACCUa -3' miRNA: 3'- aUUUUCCC-GGgGC----CAGCGG---CCCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 44095 | 0.69 | 0.642489 |
Target: 5'- ----cGGGCCCgCGGcCGgCGGcggcuGACCCg -3' miRNA: 3'- auuuuCCCGGG-GCCaGCgGCC-----CUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 63809 | 0.71 | 0.501475 |
Target: 5'- cGAGGGcGGCUCCGuGaCGCUGGG-CCCa -3' miRNA: 3'- aUUUUC-CCGGGGC-CaGCGGCCCuGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 225959 | 0.77 | 0.228085 |
Target: 5'- --cGAGGGCgCCUGGgagCGCCuGGACCCc -3' miRNA: 3'- auuUUCCCG-GGGCCa--GCGGcCCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 165221 | 0.7 | 0.556815 |
Target: 5'- aAAGAGGGCCCucuccggcgacgCGaGcCGCCggaggaGGGGCCCg -3' miRNA: 3'- aUUUUCCCGGG------------GC-CaGCGG------CCCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 68691 | 0.78 | 0.203309 |
Target: 5'- -uGAGGGGCgCCGGcggagccgUCGCCgcGGGACCCg -3' miRNA: 3'- auUUUCCCGgGGCC--------AGCGG--CCCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 3928 | 0.71 | 0.501475 |
Target: 5'- --cGAGGGUCCCGGcCGCCGaGGCa- -3' miRNA: 3'- auuUUCCCGGGGCCaGCGGCcCUGgg -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 33932 | 0.71 | 0.519679 |
Target: 5'- ----cGGGCCacggCCGGUCGCUGGauCCCg -3' miRNA: 3'- auuuuCCCGG----GGCCAGCGGCCcuGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 138342 | 0.72 | 0.469447 |
Target: 5'- cUGGGAGGGCCagcgCCucagcuguccgcggcGGUCGCgGGcGACCCa -3' miRNA: 3'- -AUUUUCCCGG----GG---------------CCAGCGgCC-CUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 141573 | 0.73 | 0.415251 |
Target: 5'- gAAGAGGGCUCCGGggCGCC---GCCCg -3' miRNA: 3'- aUUUUCCCGGGGCCa-GCGGcccUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 111623 | 0.74 | 0.383388 |
Target: 5'- ------aGUCCCGG-CGCCGGGAUCCg -3' miRNA: 3'- auuuuccCGGGGCCaGCGGCCCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 153342 | 0.75 | 0.297983 |
Target: 5'- ----uGGGCCCCGG-C-CCGGGcCCCg -3' miRNA: 3'- auuuuCCCGGGGCCaGcGGCCCuGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 29703 | 0.67 | 0.733937 |
Target: 5'- aUGAAcuGGCCCaCGcgcugguuguagcuGUCaCCGGGGCCCg -3' miRNA: 3'- -AUUUucCCGGG-GC--------------CAGcGGCCCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 90412 | 0.68 | 0.690117 |
Target: 5'- gAAGGGGGCguaucaguaUCCGG--GCUGGGAUCCg -3' miRNA: 3'- aUUUUCCCG---------GGGCCagCGGCCCUGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 35159 | 0.68 | 0.661609 |
Target: 5'- --cGAGGGCgCCUGcGucUCGCUGGGcugGCCCu -3' miRNA: 3'- auuUUCCCG-GGGC-C--AGCGGCCC---UGGG- -5' |
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13936 | 3' | -61.2 | NC_003521.1 | + | 203689 | 0.69 | 0.646317 |
Target: 5'- --cGGGGGCgCCCGGgccuugugcgacggCcugggaggcgugGCCGGGACCUg -3' miRNA: 3'- auuUUCCCG-GGGCCa-------------G------------CGGCCCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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