miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 6099 1.1 0.001456
Target:  5'- aUAAAAGGGCCCCGGUCGCCGGGACCCg -3'
miRNA:   3'- -AUUUUCCCGGGGCCAGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 63809 0.71 0.501475
Target:  5'- cGAGGGcGGCUCCGuGaCGCUGGG-CCCa -3'
miRNA:   3'- aUUUUC-CCGGGGC-CaGCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 227175 0.71 0.510544
Target:  5'- gGAGGGGGCCgcggaggccgcgCUGGcCGCCGuGGugCCc -3'
miRNA:   3'- aUUUUCCCGG------------GGCCaGCGGC-CCugGG- -5'
13936 3' -61.2 NC_003521.1 + 45998 0.66 0.822918
Target:  5'- ---cAGGGUCUCGGccaguccgUCGCgGGGGUCCu -3'
miRNA:   3'- auuuUCCCGGGGCC--------AGCGgCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 153342 0.75 0.297983
Target:  5'- ----uGGGCCCCGG-C-CCGGGcCCCg -3'
miRNA:   3'- auuuuCCCGGGGCCaGcGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 120554 0.75 0.304502
Target:  5'- gGGAAGGGCCCucggcggccggCGGUC-CCGGGggagcGCCCg -3'
miRNA:   3'- aUUUUCCCGGG-----------GCCAGcGGCCC-----UGGG- -5'
13936 3' -61.2 NC_003521.1 + 111623 0.74 0.383388
Target:  5'- ------aGUCCCGG-CGCCGGGAUCCg -3'
miRNA:   3'- auuuuccCGGGGCCaGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 137541 0.73 0.399116
Target:  5'- ------aGCUCCaGGUCGCUGGGGCCCc -3'
miRNA:   3'- auuuuccCGGGG-CCAGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 141573 0.73 0.415251
Target:  5'- gAAGAGGGCUCCGGggCGCC---GCCCg -3'
miRNA:   3'- aUUUUCCCGGGGCCa-GCGGcccUGGG- -5'
13936 3' -61.2 NC_003521.1 + 204393 0.71 0.492479
Target:  5'- ----cGGGCUCCGG-CGCCuGG-CCCg -3'
miRNA:   3'- auuuuCCCGGGGCCaGCGGcCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 228338 0.72 0.465953
Target:  5'- ----cGGcGCCUCGGacgugaGCUGGGACCCg -3'
miRNA:   3'- auuuuCC-CGGGGCCag----CGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 150739 0.73 0.406327
Target:  5'- -uGAAGGGCCCCaccaGGcgcUCGCCGccccagaccaggaGGACCCc -3'
miRNA:   3'- auUUUCCCGGGG----CC---AGCGGC-------------CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 68691 0.78 0.203309
Target:  5'- -uGAGGGGCgCCGGcggagccgUCGCCgcGGGACCCg -3'
miRNA:   3'- auUUUCCCGgGGCC--------AGCGG--CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 138342 0.72 0.469447
Target:  5'- cUGGGAGGGCCagcgCCucagcuguccgcggcGGUCGCgGGcGACCCa -3'
miRNA:   3'- -AUUUUCCCGG----GG---------------CCAGCGgCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 225959 0.77 0.228085
Target:  5'- --cGAGGGCgCCUGGgagCGCCuGGACCCc -3'
miRNA:   3'- auuUUCCCG-GGGCCa--GCGGcCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 154695 0.73 0.399116
Target:  5'- aAGAAGGGCCagCGGUCGaCgCGGGggacgcgcguGCCCg -3'
miRNA:   3'- aUUUUCCCGGg-GCCAGC-G-GCCC----------UGGG- -5'
13936 3' -61.2 NC_003521.1 + 142132 0.72 0.480896
Target:  5'- --uGAGGGCCUgguggcuggugaggCGGU-GCCGGGAgCCg -3'
miRNA:   3'- auuUUCCCGGG--------------GCCAgCGGCCCUgGG- -5'
13936 3' -61.2 NC_003521.1 + 3928 0.71 0.501475
Target:  5'- --cGAGGGUCCCGGcCGCCGaGGCa- -3'
miRNA:   3'- auuUUCCCGGGGCCaGCGGCcCUGgg -5'
13936 3' -61.2 NC_003521.1 + 36292 0.77 0.255368
Target:  5'- gAAGAGGGCCaagaCGGUCG-UGGGGCCg -3'
miRNA:   3'- aUUUUCCCGGg---GCCAGCgGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 54169 0.74 0.353191
Target:  5'- aAGGGGGGCgCCGGUgGCgGGGGCg- -3'
miRNA:   3'- aUUUUCCCGgGGCCAgCGgCCCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.