miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 3' -59 NC_003521.1 + 30411 0.66 0.878203
Target:  5'- -gCCCa-CGcCGACCaCGCUGCgGUCCc -3'
miRNA:   3'- aaGGGaaGCaGCUGG-GCGAUGgCGGG- -5'
13937 3' -59 NC_003521.1 + 55861 0.66 0.884871
Target:  5'- gUCCa--CGcUGGCCCGC-ACCGCCg -3'
miRNA:   3'- aAGGgaaGCaGCUGGGCGaUGGCGGg -5'
13937 3' -59 NC_003521.1 + 203478 0.66 0.891337
Target:  5'- gUCCCggCGgauacgugCGuccUCCGCgACCGCCCc -3'
miRNA:   3'- aAGGGaaGCa-------GCu--GGGCGaUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 146504 0.66 0.871337
Target:  5'- aUCCC-UCGgcCGACCCGCagaaacgGCgGCuCCa -3'
miRNA:   3'- aAGGGaAGCa-GCUGGGCGa------UGgCG-GG- -5'
13937 3' -59 NC_003521.1 + 41752 0.66 0.871337
Target:  5'- cUCuCCUUCGUCauCCUGCagaCGCCCu -3'
miRNA:   3'- aAG-GGAAGCAGcuGGGCGaugGCGGG- -5'
13937 3' -59 NC_003521.1 + 196468 0.66 0.891337
Target:  5'- cUCCgCUggcacUCGGCCCGUU-CCGCCUc -3'
miRNA:   3'- aAGG-GAagc--AGCUGGGCGAuGGCGGG- -5'
13937 3' -59 NC_003521.1 + 190070 0.66 0.871337
Target:  5'- gUCUUcaCGUacguucUGGCCCGCUGCUGCgCCg -3'
miRNA:   3'- aAGGGaaGCA------GCUGGGCGAUGGCG-GG- -5'
13937 3' -59 NC_003521.1 + 115074 0.66 0.877525
Target:  5'- -gCCCgaCGUCGcccagaaACCCuGCUccugcgccgucGCCGCCCc -3'
miRNA:   3'- aaGGGaaGCAGC-------UGGG-CGA-----------UGGCGGG- -5'
13937 3' -59 NC_003521.1 + 97442 0.66 0.864279
Target:  5'- cUCCUccgUCGcuuUCGACCgucguCGUUGCCGCCg -3'
miRNA:   3'- aAGGGa--AGC---AGCUGG-----GCGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 80484 0.66 0.864279
Target:  5'- -gCCC-UCGaCGACggaggccaCCGC-GCCGCCCa -3'
miRNA:   3'- aaGGGaAGCaGCUG--------GGCGaUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 150669 0.66 0.864279
Target:  5'- cUCuCCggCGgCGGCgCCGCUGCUGCUg -3'
miRNA:   3'- aAG-GGaaGCaGCUG-GGCGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 67168 0.66 0.871337
Target:  5'- -cCCCUggGU---CCCGCgcaGCCGCCCg -3'
miRNA:   3'- aaGGGAagCAgcuGGGCGa--UGGCGGG- -5'
13937 3' -59 NC_003521.1 + 26239 0.66 0.864279
Target:  5'- -gCCCcUCGUCGcgcacggaacGCCagCGCUGCUGCaCCa -3'
miRNA:   3'- aaGGGaAGCAGC----------UGG--GCGAUGGCG-GG- -5'
13937 3' -59 NC_003521.1 + 63608 0.66 0.864279
Target:  5'- -aCCCagcUGUcCGACCUGCagcGCCGCCUg -3'
miRNA:   3'- aaGGGaa-GCA-GCUGGGCGa--UGGCGGG- -5'
13937 3' -59 NC_003521.1 + 128401 0.66 0.897599
Target:  5'- --gCCUUCGcCGAgC-GCggGCCGCCCu -3'
miRNA:   3'- aagGGAAGCaGCUgGgCGa-UGGCGGG- -5'
13937 3' -59 NC_003521.1 + 105561 0.66 0.871337
Target:  5'- cUCCUcgUCGUCGGCguCCGCcGCCGUg- -3'
miRNA:   3'- aAGGGa-AGCAGCUG--GGCGaUGGCGgg -5'
13937 3' -59 NC_003521.1 + 216440 0.66 0.878203
Target:  5'- --aCCUUCGcggggaaGACCagaGCgaaGCCGCCCa -3'
miRNA:   3'- aagGGAAGCag-----CUGGg--CGa--UGGCGGG- -5'
13937 3' -59 NC_003521.1 + 143168 0.66 0.878203
Target:  5'- aUCCCguggggGUCgGACCCGgcGCCGCCg -3'
miRNA:   3'- aAGGGaag---CAG-CUGGGCgaUGGCGGg -5'
13937 3' -59 NC_003521.1 + 49971 0.66 0.880894
Target:  5'- aUCCCUUcCGUCGACggucucuuacuguguCuCGC-ACCGCgCCu -3'
miRNA:   3'- aAGGGAA-GCAGCUG---------------G-GCGaUGGCG-GG- -5'
13937 3' -59 NC_003521.1 + 59073 0.66 0.864279
Target:  5'- -gUCC-UCGUCGGCCggauCGCgcgGCCGCUUg -3'
miRNA:   3'- aaGGGaAGCAGCUGG----GCGa--UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.