miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 3' -59 NC_003521.1 + 6320 1.1 0.002384
Target:  5'- aUUCCCUUCGUCGACCCGCUACCGCCCg -3'
miRNA:   3'- -AAGGGAAGCAGCUGGGCGAUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 142178 0.84 0.126565
Target:  5'- cUCgCCgUCGUCGACgCCGCUACCGCCg -3'
miRNA:   3'- aAG-GGaAGCAGCUG-GGCGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 130124 0.79 0.24616
Target:  5'- -cCCCUgcgUCGUCGGCggcgccgCCGCUGCCGCCa -3'
miRNA:   3'- aaGGGA---AGCAGCUG-------GGCGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 123492 0.78 0.270113
Target:  5'- gUCgCCggcggggugUCGUCGuCgCCGCUGCCGCCCg -3'
miRNA:   3'- aAG-GGa--------AGCAGCuG-GGCGAUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 49474 0.77 0.30182
Target:  5'- gUCCCUUCGUggaccgCGACUCGCUGCgGgCCa -3'
miRNA:   3'- aAGGGAAGCA------GCUGGGCGAUGgCgGG- -5'
13937 3' -59 NC_003521.1 + 70544 0.76 0.350904
Target:  5'- uUUCUCUUCGgcgcCGACCUGCgcCUGCCCg -3'
miRNA:   3'- -AAGGGAAGCa---GCUGGGCGauGGCGGG- -5'
13937 3' -59 NC_003521.1 + 46902 0.76 0.381397
Target:  5'- aUCCCgcCGcCGACgCCGuCUACCGCCUg -3'
miRNA:   3'- aAGGGaaGCaGCUG-GGC-GAUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 154569 0.76 0.381397
Target:  5'- cUUCCCg-CGUCGGCCCcggacGCcgUGCCGCCCc -3'
miRNA:   3'- -AAGGGaaGCAGCUGGG-----CG--AUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 216897 0.75 0.397292
Target:  5'- uUUCCCggCGUCGgcgcGCCCGcCUACCGUCg -3'
miRNA:   3'- -AAGGGaaGCAGC----UGGGC-GAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 191306 0.75 0.421917
Target:  5'- --aCUgagCGUCGGCCagcagaCGCUGCCGCCCg -3'
miRNA:   3'- aagGGaa-GCAGCUGG------GCGAUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 77672 0.75 0.421917
Target:  5'- -cCCCgUCGUCGGCugCCGCUGCCuaCCa -3'
miRNA:   3'- aaGGGaAGCAGCUG--GGCGAUGGcgGG- -5'
13937 3' -59 NC_003521.1 + 131468 0.75 0.430328
Target:  5'- cUCUCggccUCGUCGGCCUccugcgccggcuGCUGCCGCCUc -3'
miRNA:   3'- aAGGGa---AGCAGCUGGG------------CGAUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 196440 0.74 0.447439
Target:  5'- -gCCCgg-GUCGGCCgGCUGCCGCgCg -3'
miRNA:   3'- aaGGGaagCAGCUGGgCGAUGGCGgG- -5'
13937 3' -59 NC_003521.1 + 223770 0.74 0.482753
Target:  5'- gUCCUcgCuGUCGGCgCCGUUACCGCCg -3'
miRNA:   3'- aAGGGaaG-CAGCUG-GGCGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 126969 0.73 0.491791
Target:  5'- -aCCCgcgccgUCGUCGccggccgcCCCGCUGCCGCUg -3'
miRNA:   3'- aaGGGa-----AGCAGCu-------GGGCGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 57885 0.73 0.498165
Target:  5'- -aCUCUUCGgucUCcaugaugucaacguGGCCCGCUACCGCCUc -3'
miRNA:   3'- aaGGGAAGC---AG--------------CUGGGCGAUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 146137 0.73 0.538068
Target:  5'- -gCCUcgUCGUCGGCgCCGCccGCCGCCg -3'
miRNA:   3'- aaGGGa-AGCAGCUG-GGCGa-UGGCGGg -5'
13937 3' -59 NC_003521.1 + 178609 0.73 0.538068
Target:  5'- --aCCgccgUCGUCGucaugucuccggGCCCGCUGCUGUCCu -3'
miRNA:   3'- aagGGa---AGCAGC------------UGGGCGAUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 217479 0.72 0.557005
Target:  5'- aUCCuCUUCG-CGAUCUGC-ACCGCCg -3'
miRNA:   3'- aAGG-GAAGCaGCUGGGCGaUGGCGGg -5'
13937 3' -59 NC_003521.1 + 22575 0.72 0.576128
Target:  5'- gUUCCUgacgCGUCGcACCCGUgACgGCCCc -3'
miRNA:   3'- aAGGGAa---GCAGC-UGGGCGaUGgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.