miRNA display CGI


Results 1 - 20 of 170 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 3' -59 NC_003521.1 + 240713 0.7 0.663257
Target:  5'- gUCCCcgCGaCGACCCGC--CgGCCCg -3'
miRNA:   3'- aAGGGaaGCaGCUGGGCGauGgCGGG- -5'
13937 3' -59 NC_003521.1 + 69204 0.71 0.6041
Target:  5'- -aCCCgaCGUCGGcggcacuCCCGCcGCCGCUCg -3'
miRNA:   3'- aaGGGaaGCAGCU-------GGGCGaUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 28322 0.71 0.605068
Target:  5'- -cCCCggCG-CGGCCUGCggACCGCCg -3'
miRNA:   3'- aaGGGaaGCaGCUGGGCGa-UGGCGGg -5'
13937 3' -59 NC_003521.1 + 202578 0.71 0.614759
Target:  5'- -aCCCUgggccgCGUCucgccccGCCCGCcgagGCCGCCCu -3'
miRNA:   3'- aaGGGAa-----GCAGc------UGGGCGa---UGGCGGG- -5'
13937 3' -59 NC_003521.1 + 62007 0.71 0.624462
Target:  5'- cUUCUCgUCGaUCGACCCGC--CCGCCg -3'
miRNA:   3'- -AAGGGaAGC-AGCUGGGCGauGGCGGg -5'
13937 3' -59 NC_003521.1 + 92365 0.71 0.63417
Target:  5'- gUCCUgccCGUCcgcucGCCCGCUGCCGUCg -3'
miRNA:   3'- aAGGGaa-GCAGc----UGGGCGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 164 0.7 0.663257
Target:  5'- gUCCCcgCGaCGACCCGC--CgGCCCg -3'
miRNA:   3'- aAGGGaaGCaGCUGGGCGauGgCGGG- -5'
13937 3' -59 NC_003521.1 + 42961 0.7 0.663257
Target:  5'- -gCCCagCGagcgCGACCCGCcGgCGCCCa -3'
miRNA:   3'- aaGGGaaGCa---GCUGGGCGaUgGCGGG- -5'
13937 3' -59 NC_003521.1 + 90033 0.7 0.663257
Target:  5'- -cCCCUgg--CGGCUCGCgcCCGCCCg -3'
miRNA:   3'- aaGGGAagcaGCUGGGCGauGGCGGG- -5'
13937 3' -59 NC_003521.1 + 92233 0.71 0.603132
Target:  5'- gUCCCUcuacccccauccCGUCGACCCucccugggugccGCUGCCGCUa -3'
miRNA:   3'- aAGGGAa-----------GCAGCUGGG------------CGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 68350 0.72 0.595396
Target:  5'- aUCCCgcCGaCGGCgcaCCGCUGCCgGCCCu -3'
miRNA:   3'- aAGGGaaGCaGCUG---GGCGAUGG-CGGG- -5'
13937 3' -59 NC_003521.1 + 227356 0.72 0.585747
Target:  5'- -gCCCagacCGUCGACggCGCUACCGCCg -3'
miRNA:   3'- aaGGGaa--GCAGCUGg-GCGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 130124 0.79 0.24616
Target:  5'- -cCCCUgcgUCGUCGGCggcgccgCCGCUGCCGCCa -3'
miRNA:   3'- aaGGGA---AGCAGCUG-------GGCGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 123492 0.78 0.270113
Target:  5'- gUCgCCggcggggugUCGUCGuCgCCGCUGCCGCCCg -3'
miRNA:   3'- aAG-GGa--------AGCAGCuG-GGCGAUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 131468 0.75 0.430328
Target:  5'- cUCUCggccUCGUCGGCCUccugcgccggcuGCUGCCGCCUc -3'
miRNA:   3'- aAGGGa---AGCAGCUGGG------------CGAUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 196440 0.74 0.447439
Target:  5'- -gCCCgg-GUCGGCCgGCUGCCGCgCg -3'
miRNA:   3'- aaGGGaagCAGCUGGgCGAUGGCGgG- -5'
13937 3' -59 NC_003521.1 + 223770 0.74 0.482753
Target:  5'- gUCCUcgCuGUCGGCgCCGUUACCGCCg -3'
miRNA:   3'- aAGGGaaG-CAGCUG-GGCGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 126969 0.73 0.491791
Target:  5'- -aCCCgcgccgUCGUCGccggccgcCCCGCUGCCGCUg -3'
miRNA:   3'- aaGGGa-----AGCAGCu-------GGGCGAUGGCGGg -5'
13937 3' -59 NC_003521.1 + 57885 0.73 0.498165
Target:  5'- -aCUCUUCGgucUCcaugaugucaacguGGCCCGCUACCGCCUc -3'
miRNA:   3'- aaGGGAAGC---AG--------------CUGGGCGAUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 22575 0.72 0.576128
Target:  5'- gUUCCUgacgCGUCGcACCCGUgACgGCCCc -3'
miRNA:   3'- aAGGGAa---GCAGC-UGGGCGaUGgCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.