miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 3' -59 NC_003521.1 + 164 0.7 0.663257
Target:  5'- gUCCCcgCGaCGACCCGC--CgGCCCg -3'
miRNA:   3'- aAGGGaaGCaGCUGGGCGauGgCGGG- -5'
13937 3' -59 NC_003521.1 + 4363 0.69 0.757596
Target:  5'- gUUCgCUcaUCG-CGGCCCGCgucCCGCUCg -3'
miRNA:   3'- -AAGgGA--AGCaGCUGGGCGau-GGCGGG- -5'
13937 3' -59 NC_003521.1 + 6320 1.1 0.002384
Target:  5'- aUUCCCUUCGUCGACCCGCUACCGCCCg -3'
miRNA:   3'- -AAGGGAAGCAGCUGGGCGAUGGCGGG- -5'
13937 3' -59 NC_003521.1 + 6677 0.72 0.585747
Target:  5'- gUCCCgaggCGgcaaGACCCGUcGCCGCCg -3'
miRNA:   3'- aAGGGaa--GCag--CUGGGCGaUGGCGGg -5'
13937 3' -59 NC_003521.1 + 11860 0.68 0.809915
Target:  5'- -aCCCgccaGUgGACCCGCggGCCGCg- -3'
miRNA:   3'- aaGGGaag-CAgCUGGGCGa-UGGCGgg -5'
13937 3' -59 NC_003521.1 + 17120 0.67 0.841996
Target:  5'- -aCCCggcgaggUCGUCGAUCCugccggcgcGCU-UCGCCCg -3'
miRNA:   3'- aaGGGa------AGCAGCUGGG---------CGAuGGCGGG- -5'
13937 3' -59 NC_003521.1 + 19701 0.67 0.857032
Target:  5'- cUCCuCUUCGUCuuCCCGgucCUGCCGgCUg -3'
miRNA:   3'- aAGG-GAAGCAGcuGGGC---GAUGGCgGG- -5'
13937 3' -59 NC_003521.1 + 21203 0.69 0.729985
Target:  5'- uUUCCUUUCGcucCGACCCGCgugcgauugagACCGgucCCCg -3'
miRNA:   3'- -AAGGGAAGCa--GCUGGGCGa----------UGGC---GGG- -5'
13937 3' -59 NC_003521.1 + 22575 0.72 0.576128
Target:  5'- gUUCCUgacgCGUCGcACCCGUgACgGCCCc -3'
miRNA:   3'- aAGGGAa---GCAGC-UGGGCGaUGgCGGG- -5'
13937 3' -59 NC_003521.1 + 26239 0.66 0.864279
Target:  5'- -gCCCcUCGUCGcgcacggaacGCCagCGCUGCUGCaCCa -3'
miRNA:   3'- aaGGGaAGCAGC----------UGG--GCGAUGGCG-GG- -5'
13937 3' -59 NC_003521.1 + 28322 0.71 0.605068
Target:  5'- -cCCCggCG-CGGCCUGCggACCGCCg -3'
miRNA:   3'- aaGGGaaGCaGCUGGGCGa-UGGCGGg -5'
13937 3' -59 NC_003521.1 + 29488 0.66 0.897599
Target:  5'- -cCCCaaccacUCG-CG-CCCGCgggACCGCCUg -3'
miRNA:   3'- aaGGGa-----AGCaGCuGGGCGa--UGGCGGG- -5'
13937 3' -59 NC_003521.1 + 30411 0.66 0.878203
Target:  5'- -gCCCa-CGcCGACCaCGCUGCgGUCCc -3'
miRNA:   3'- aaGGGaaGCaGCUGG-GCGAUGgCGGG- -5'
13937 3' -59 NC_003521.1 + 32401 0.69 0.748481
Target:  5'- -gCCgCUUgGUgcacCGcGCCCGCUACCuGCCCg -3'
miRNA:   3'- aaGG-GAAgCA----GC-UGGGCGAUGG-CGGG- -5'
13937 3' -59 NC_003521.1 + 34108 0.67 0.841996
Target:  5'- cUCCCUcuaUCGUCGACCgcagGCUgAUCGUCg -3'
miRNA:   3'- aAGGGA---AGCAGCUGGg---CGA-UGGCGGg -5'
13937 3' -59 NC_003521.1 + 34785 0.66 0.864279
Target:  5'- -gCUCgcgCGucUCGGCCCGCgGCCGCUa -3'
miRNA:   3'- aaGGGaa-GC--AGCUGGGCGaUGGCGGg -5'
13937 3' -59 NC_003521.1 + 36092 0.67 0.83968
Target:  5'- aUCCCgaugCGggaGACCCGCUaacgacggcgugccGCgaCGCCCg -3'
miRNA:   3'- aAGGGaa--GCag-CUGGGCGA--------------UG--GCGGG- -5'
13937 3' -59 NC_003521.1 + 37141 0.67 0.81817
Target:  5'- -gCCCguacgUgGUC-ACCCGCuUGCCgGCCCa -3'
miRNA:   3'- aaGGGa----AgCAGcUGGGCG-AUGG-CGGG- -5'
13937 3' -59 NC_003521.1 + 39280 0.68 0.792977
Target:  5'- -aUCCUUCGgCGgcGCCCGCU-CCGgCCu -3'
miRNA:   3'- aaGGGAAGCaGC--UGGGCGAuGGCgGG- -5'
13937 3' -59 NC_003521.1 + 41752 0.66 0.871337
Target:  5'- cUCuCCUUCGUCauCCUGCagaCGCCCu -3'
miRNA:   3'- aAG-GGAAGCAGcuGGGCGaugGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.