Results 41 - 60 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13937 | 5' | -52.8 | NC_003521.1 | + | 45669 | 0.7 | 0.954189 |
Target: 5'- -aGGUGgaggccacggcCGACGAagaGGCGGCcGAUGACGu -3' miRNA: 3'- caCCAU-----------GCUGCUg--CUGUCG-CUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 46638 | 0.67 | 0.989067 |
Target: 5'- -cGGUagACGGCGuCGGCGGCGG-GAUc -3' miRNA: 3'- caCCA--UGCUGCuGCUGUCGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 50551 | 0.77 | 0.665227 |
Target: 5'- -aGGUGCGGCGGCaGCAGCGGcgGACc -3' miRNA: 3'- caCCAUGCUGCUGcUGUCGCUa-CUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 52228 | 0.68 | 0.980562 |
Target: 5'- -cGGUAgGGCGGCGggcuacaguuggGCAGCGGcaGGCGg -3' miRNA: 3'- caCCAUgCUGCUGC------------UGUCGCUa-CUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 52644 | 0.71 | 0.916183 |
Target: 5'- -aGGccGCGACGGCGGuCAG-GAUGACGc -3' miRNA: 3'- caCCa-UGCUGCUGCU-GUCgCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 53635 | 0.69 | 0.961458 |
Target: 5'- cUGGUGCGcCG-CGuCAGCGG-GACGg -3' miRNA: 3'- cACCAUGCuGCuGCuGUCGCUaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 54158 | 0.68 | 0.976042 |
Target: 5'- -cGGUgGCGGgGGCGGCGGCGA--ACGc -3' miRNA: 3'- caCCA-UGCUgCUGCUGUCGCUacUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 54320 | 0.72 | 0.878162 |
Target: 5'- -cGGcauCGGCGgagGCGGCGGUGGUGGCGg -3' miRNA: 3'- caCCau-GCUGC---UGCUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 54446 | 0.69 | 0.961458 |
Target: 5'- -nGGcaaguCGACGuCGcGCGGCGGUGGCGg -3' miRNA: 3'- caCCau---GCUGCuGC-UGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 54469 | 0.79 | 0.575239 |
Target: 5'- -gGGcUACG-CGGCGGCGGUGGUGGCGg -3' miRNA: 3'- caCC-AUGCuGCUGCUGUCGCUACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 55927 | 0.67 | 0.991511 |
Target: 5'- gGUGGggccCGACGACGAggUGGCGcaccuguggagcGUGACGc -3' miRNA: 3'- -CACCau--GCUGCUGCU--GUCGC------------UACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 57295 | 0.68 | 0.980352 |
Target: 5'- -cGGUGCG-CGGCGACugguggauaAGCGAgggcccgUGGCGc -3' miRNA: 3'- caCCAUGCuGCUGCUG---------UCGCU-------ACUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 58224 | 0.69 | 0.973513 |
Target: 5'- -aGG-ACGAUGAUGAUAGCGA-GAuCGa -3' miRNA: 3'- caCCaUGCUGCUGCUGUCGCUaCU-GC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 58711 | 0.66 | 0.993502 |
Target: 5'- cGUGGUGCG-CGGaaaguucgccCGGCAGCGcUG-CGg -3' miRNA: 3'- -CACCAUGCuGCU----------GCUGUCGCuACuGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 59611 | 0.67 | 0.987655 |
Target: 5'- aGUGGcgGCGGCccCGGCGGCGAccGCGg -3' miRNA: 3'- -CACCa-UGCUGcuGCUGUCGCUacUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 66367 | 0.66 | 0.996362 |
Target: 5'- cGUGGc-CGGCGGCGAgCAGCGAc---- -3' miRNA: 3'- -CACCauGCUGCUGCU-GUCGCUacugc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 71645 | 0.75 | 0.753051 |
Target: 5'- -cGG-ACGACGGCGuCGGCGgcGGCGg -3' miRNA: 3'- caCCaUGCUGCUGCuGUCGCuaCUGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 72538 | 0.66 | 0.993501 |
Target: 5'- -cGGagGCGGCGGCGACGGUGucguCGu -3' miRNA: 3'- caCCa-UGCUGCUGCUGUCGCuacuGC- -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 72713 | 0.8 | 0.497653 |
Target: 5'- -aGGUagacgacagucGCGACGACGACGGCGAgGACu -3' miRNA: 3'- caCCA-----------UGCUGCUGCUGUCGCUaCUGc -5' |
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13937 | 5' | -52.8 | NC_003521.1 | + | 72836 | 0.69 | 0.961458 |
Target: 5'- -cGGuUGCGAUGGCGACGcugagaggucGCGA-GACGa -3' miRNA: 3'- caCC-AUGCUGCUGCUGU----------CGCUaCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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