miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 3' -55.7 NC_003521.1 + 27972 0.66 0.965802
Target:  5'- cCAGgcGGCGCUCaCGGccacGGCGGCAGc- -3'
miRNA:   3'- aGUUacUCGCGAG-GCU----CCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 116879 0.66 0.965802
Target:  5'- gCAGUG-GCGCggCUGcGGCGGCGc-- -3'
miRNA:   3'- aGUUACuCGCGa-GGCuCCGCCGUucu -5'
13938 3' -55.7 NC_003521.1 + 105857 0.66 0.965802
Target:  5'- ---cUGAGCgGCUgcgCCGGcGGCGGCGAcGAc -3'
miRNA:   3'- aguuACUCG-CGA---GGCU-CCGCCGUU-CU- -5'
13938 3' -55.7 NC_003521.1 + 211982 0.66 0.965802
Target:  5'- cCAGUGcGUGaUCCGccacGGCGGCAAGc -3'
miRNA:   3'- aGUUACuCGCgAGGCu---CCGCCGUUCu -5'
13938 3' -55.7 NC_003521.1 + 227111 0.66 0.965802
Target:  5'- -uGAUGGGCcuGC-CCGGcgcGGCGGCGGGc -3'
miRNA:   3'- agUUACUCG--CGaGGCU---CCGCCGUUCu -5'
13938 3' -55.7 NC_003521.1 + 102787 0.66 0.965487
Target:  5'- gCGAUGAcGCGCcggcggCCGccagcucGGGCGGCAGc- -3'
miRNA:   3'- aGUUACU-CGCGa-----GGC-------UCCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 24175 0.66 0.962557
Target:  5'- cUCGGaaagGAGCGaagCCG-GGCGGCAugggcGGAa -3'
miRNA:   3'- -AGUUa---CUCGCga-GGCuCCGCCGU-----UCU- -5'
13938 3' -55.7 NC_003521.1 + 153768 0.66 0.962557
Target:  5'- gCAGcGAGCGCcUgGAGGCgcagcugcgcGGCAAGGg -3'
miRNA:   3'- aGUUaCUCGCGaGgCUCCG----------CCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 235941 0.66 0.961884
Target:  5'- uUCGGggucgGGGgGUUCauagauacgaaaGGGGCGGCGAGGg -3'
miRNA:   3'- -AGUUa----CUCgCGAGg-----------CUCCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 90786 0.66 0.959104
Target:  5'- gUUAGUGGGCGUaCCuAGGgGGCGuGAc -3'
miRNA:   3'- -AGUUACUCGCGaGGcUCCgCCGUuCU- -5'
13938 3' -55.7 NC_003521.1 + 32014 0.66 0.959104
Target:  5'- cCGAUGuGCcggUCGAGGCGGCGgAGGc -3'
miRNA:   3'- aGUUACuCGcgaGGCUCCGCCGU-UCU- -5'
13938 3' -55.7 NC_003521.1 + 45540 0.66 0.959104
Target:  5'- ----cGGGCGCcCCGucagcGGCGGCGAa- -3'
miRNA:   3'- aguuaCUCGCGaGGCu----CCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 103171 0.66 0.959104
Target:  5'- cCAuUGAGCGCUCCcugucGGGCGuGCu--- -3'
miRNA:   3'- aGUuACUCGCGAGGc----UCCGC-CGuucu -5'
13938 3' -55.7 NC_003521.1 + 113171 0.66 0.959104
Target:  5'- -gAcgGGGCcCUCCcAGGCGGCGAu- -3'
miRNA:   3'- agUuaCUCGcGAGGcUCCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 216119 0.66 0.955439
Target:  5'- ---uUGAGCGCggcgCgGAGGCcgcGGCAgaGGAa -3'
miRNA:   3'- aguuACUCGCGa---GgCUCCG---CCGU--UCU- -5'
13938 3' -55.7 NC_003521.1 + 168466 0.66 0.954297
Target:  5'- ----gGGGCGCUgguggcuggucaggUCGAucaugGGCGGCGAGAc -3'
miRNA:   3'- aguuaCUCGCGA--------------GGCU-----CCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 27456 0.66 0.947031
Target:  5'- uUCGgccGUGAGCGCcaggcuggccaggUCCGucauguGGCGGUcgGAGAa -3'
miRNA:   3'- -AGU---UACUCGCG-------------AGGCu-----CCGCCG--UUCU- -5'
13938 3' -55.7 NC_003521.1 + 240737 0.67 0.943128
Target:  5'- --cGUGAGCuGC-CgGAGGCGGCGc-- -3'
miRNA:   3'- aguUACUCG-CGaGgCUCCGCCGUucu -5'
13938 3' -55.7 NC_003521.1 + 91937 0.67 0.943128
Target:  5'- gCGGUGgacccGGCgGCggaccCCGuGGCGGCGAGGg -3'
miRNA:   3'- aGUUAC-----UCG-CGa----GGCuCCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 163757 0.67 0.938576
Target:  5'- aCAGcG-GCGCUCaCGGcGGCGGCAAc- -3'
miRNA:   3'- aGUUaCuCGCGAG-GCU-CCGCCGUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.