Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13938 | 3' | -55.7 | NC_003521.1 | + | 130416 | 0.68 | 0.906478 |
Target: 5'- cCAggGcguAGCGCUCgGuGGCGGCAGc- -3' miRNA: 3'- aGUuaC---UCGCGAGgCuCCGCCGUUcu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 117733 | 0.68 | 0.91809 |
Target: 5'- gUCGccGGGUGUggagGAGGCGGCGGGGg -3' miRNA: 3'- -AGUuaCUCGCGagg-CUCCGCCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 117046 | 0.71 | 0.775023 |
Target: 5'- cCAGUGuuuCGC-CCGAGGCGGCcgcGGAg -3' miRNA: 3'- aGUUACuc-GCGaGGCUCCGCCGu--UCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 116879 | 0.66 | 0.965802 |
Target: 5'- gCAGUG-GCGCggCUGcGGCGGCGc-- -3' miRNA: 3'- aGUUACuCGCGa-GGCuCCGCCGUucu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 114790 | 0.71 | 0.775023 |
Target: 5'- aUCGAUG-GUGC-CCGuGGCGGCGguGGGc -3' miRNA: 3'- -AGUUACuCGCGaGGCuCCGCCGU--UCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 114375 | 0.78 | 0.394769 |
Target: 5'- cCGGUGAGCagaUCCGAGGCGGCGcGGu -3' miRNA: 3'- aGUUACUCGcg-AGGCUCCGCCGUuCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 113171 | 0.66 | 0.959104 |
Target: 5'- -gAcgGGGCcCUCCcAGGCGGCGAu- -3' miRNA: 3'- agUuaCUCGcGAGGcUCCGCCGUUcu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 113055 | 0.67 | 0.928791 |
Target: 5'- ----aGAGCGCgugcCCGuAGGCGGCcAGc -3' miRNA: 3'- aguuaCUCGCGa---GGC-UCCGCCGuUCu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 105857 | 0.66 | 0.965802 |
Target: 5'- ---cUGAGCgGCUgcgCCGGcGGCGGCGAcGAc -3' miRNA: 3'- aguuACUCG-CGA---GGCU-CCGCCGUU-CU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 105026 | 0.71 | 0.747104 |
Target: 5'- aCGG-GAGCGCUUCGAGGaCGGCc--- -3' miRNA: 3'- aGUUaCUCGCGAGGCUCC-GCCGuucu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 103171 | 0.66 | 0.959104 |
Target: 5'- cCAuUGAGCGCUCCcugucGGGCGuGCu--- -3' miRNA: 3'- aGUuACUCGCGAGGc----UCCGC-CGuucu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 102787 | 0.66 | 0.965487 |
Target: 5'- gCGAUGAcGCGCcggcggCCGccagcucGGGCGGCAGc- -3' miRNA: 3'- aGUUACU-CGCGa-----GGC-------UCCGCCGUUcu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 102338 | 0.72 | 0.708569 |
Target: 5'- --cGUGGGCGCcgacgCCGGGGUGGCGgcAGGc -3' miRNA: 3'- aguUACUCGCGa----GGCUCCGCCGU--UCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 91937 | 0.67 | 0.943128 |
Target: 5'- gCGGUGgacccGGCgGCggaccCCGuGGCGGCGAGGg -3' miRNA: 3'- aGUUAC-----UCG-CGa----GGCuCCGCCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 90786 | 0.66 | 0.959104 |
Target: 5'- gUUAGUGGGCGUaCCuAGGgGGCGuGAc -3' miRNA: 3'- -AGUUACUCGCGaGGcUCCgCCGUuCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 73630 | 0.67 | 0.923555 |
Target: 5'- aCGAUGAGCGUgcugagggCCGuGcGCGGCGc-- -3' miRNA: 3'- aGUUACUCGCGa-------GGCuC-CGCCGUucu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 66808 | 0.68 | 0.900334 |
Target: 5'- gUCGGUGaAGCGCgUCuUGAGGuCGGCGAu- -3' miRNA: 3'- -AGUUAC-UCGCG-AG-GCUCC-GCCGUUcu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 54171 | 0.68 | 0.893967 |
Target: 5'- cCAAgggGGGCGCcgguggCgGGGGCGGCGGcGAa -3' miRNA: 3'- aGUUa--CUCGCGa-----GgCUCCGCCGUU-CU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 53847 | 0.68 | 0.893967 |
Target: 5'- -aAGUGA--GCUUCGAGGCGGCcccGGGAg -3' miRNA: 3'- agUUACUcgCGAGGCUCCGCCG---UUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 52179 | 0.72 | 0.727995 |
Target: 5'- aUCGAacGuGUGCcgCCGGGGCGGCGAGc -3' miRNA: 3'- -AGUUa-CuCGCGa-GGCUCCGCCGUUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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