miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 42290 0.66 0.655249
Target:  5'- aGCUGC-GUGGUgccgGCGGCGUCUgUCg -3'
miRNA:   3'- gCGGCGcCAUCGa---CGCCGCGGGgAGg -5'
13938 5' -64.4 NC_003521.1 + 42559 0.66 0.636535
Target:  5'- aCGCC-CGGcUGGCUGUccGGCGgCCgaguCUCCu -3'
miRNA:   3'- -GCGGcGCC-AUCGACG--CCGCgGG----GAGG- -5'
13938 5' -64.4 NC_003521.1 + 43440 0.72 0.353252
Target:  5'- gGUCGCGGUGGCgcucgUGCGGCagcagcGCCaccagcgcgugcaCCUCCa -3'
miRNA:   3'- gCGGCGCCAUCG-----ACGCCG------CGG-------------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 43486 0.71 0.391167
Target:  5'- gGCCGUGcUGGCcGCGGCGgCCaacaUCCg -3'
miRNA:   3'- gCGGCGCcAUCGaCGCCGCgGGg---AGG- -5'
13938 5' -64.4 NC_003521.1 + 43843 0.71 0.398906
Target:  5'- gGCCGCGGgcccGUcacaGGCGCCCCggCCg -3'
miRNA:   3'- gCGGCGCCau--CGacg-CCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 44086 0.66 0.686892
Target:  5'- gGCCgGCGGcGGCUGaccCGGCugcugcgacauggcgGCCCC-CCu -3'
miRNA:   3'- gCGG-CGCCaUCGAC---GCCG---------------CGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 45576 0.68 0.556513
Target:  5'- aGCCGuCGGccagcucgGGCUccggcuccuggcccaGCGGCGCCCgguccaugauCUCCa -3'
miRNA:   3'- gCGGC-GCCa-------UCGA---------------CGCCGCGGG----------GAGG- -5'
13938 5' -64.4 NC_003521.1 + 45740 0.66 0.684113
Target:  5'- uGCCGUGGUGGUgggccgggugaaggUGacgcccgaggacgaGGCGCCCgUaCCg -3'
miRNA:   3'- gCGGCGCCAUCG--------------ACg-------------CCGCGGGgA-GG- -5'
13938 5' -64.4 NC_003521.1 + 45803 0.72 0.353969
Target:  5'- uCGCCGCc---GCUGacggGGCGCCCgCUCCa -3'
miRNA:   3'- -GCGGCGccauCGACg---CCGCGGG-GAGG- -5'
13938 5' -64.4 NC_003521.1 + 45958 0.69 0.49885
Target:  5'- uCGCCGCGGUAcgguguccGCU-CGGUGUCCggCCc -3'
miRNA:   3'- -GCGGCGCCAU--------CGAcGCCGCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 46313 0.67 0.580512
Target:  5'- cCGCC-CGGU-GCcaacGUcauGGCGCCCCUCa -3'
miRNA:   3'- -GCGGcGCCAuCGa---CG---CCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 46559 0.78 0.142609
Target:  5'- gCGCCgggugcugaaGCGGUGGUUGCGGUaGCCCUUCUu -3'
miRNA:   3'- -GCGG----------CGCCAUCGACGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 49113 0.67 0.617809
Target:  5'- uGCgCGUGGUGaCcGCGGCGCCgCUgCu -3'
miRNA:   3'- gCG-GCGCCAUcGaCGCCGCGGgGAgG- -5'
13938 5' -64.4 NC_003521.1 + 49374 0.67 0.59912
Target:  5'- gCGCCGCGGUcaccacGCgcacuuUGUGGauauCGCCCC-CCg -3'
miRNA:   3'- -GCGGCGCCAu-----CG------ACGCC----GCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 49575 0.82 0.074464
Target:  5'- uGCCGCGugGGCcGCGGCGCCgCCUCCu -3'
miRNA:   3'- gCGGCGCcaUCGaCGCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 49639 0.67 0.59912
Target:  5'- gGuCCaGCGGggGGCaGUGGCGCUCCagCCa -3'
miRNA:   3'- gC-GG-CGCCa-UCGaCGCCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 49834 0.7 0.414676
Target:  5'- gCGCCGCGGcccacgcGGCagGUGGUGCUCUUCa -3'
miRNA:   3'- -GCGGCGCCa------UCGa-CGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 50548 0.66 0.645896
Target:  5'- uGCgGCGGcAGCaGCGGCGgaCCCggCUg -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCGCg-GGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 53503 0.66 0.645896
Target:  5'- gGCCGCu---GCUGCGGCGUCgCagcggCCg -3'
miRNA:   3'- gCGGCGccauCGACGCCGCGGgGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 53900 0.66 0.645896
Target:  5'- cCGCCGCccccGCcacCGGCGCCCC-CCu -3'
miRNA:   3'- -GCGGCGccauCGac-GCCGCGGGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.