Results 21 - 40 of 179 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 68433 | 0.66 | 0.936286 |
Target: 5'- gCUCCGCCGGCGCcc-CUCaaccgCGUg--CCg -3' miRNA: 3'- -GGGGCGGCCGCGuacGAG-----GCAauaGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 182237 | 0.66 | 0.936286 |
Target: 5'- aCCUGCCGGCgagcGCAUGUcUCGcUAgCCg -3' miRNA: 3'- gGGGCGGCCG----CGUACGaGGCaAUaGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 30079 | 0.66 | 0.936286 |
Target: 5'- uCCCCGCCGGCc---GCUCaCGgUAgcagcgCCg -3' miRNA: 3'- -GGGGCGGCCGcguaCGAG-GCaAUa-----GG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 76969 | 0.66 | 0.936286 |
Target: 5'- gCCgCCGCCGGUGCcaccGCUacacggacCCGUcGUCg -3' miRNA: 3'- -GG-GGCGGCCGCGua--CGA--------GGCAaUAGg -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 168776 | 0.66 | 0.936286 |
Target: 5'- gCCUGCUGGCGUcgccGUcCUCCGcc-UCCg -3' miRNA: 3'- gGGGCGGCCGCG----UAcGAGGCaauAGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 224671 | 0.66 | 0.936286 |
Target: 5'- gCCUgGCCGGCGagGUGUaCCGgcuggCCg -3' miRNA: 3'- -GGGgCGGCCGCg-UACGaGGCaaua-GG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 220792 | 0.66 | 0.931552 |
Target: 5'- aUCUCGCCGGCGCcAUGCagcaCCaGgaggCCa -3' miRNA: 3'- -GGGGCGGCCGCG-UACGa---GG-CaauaGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 202452 | 0.66 | 0.931552 |
Target: 5'- gCgCGCCGGCuGgGUGUcCCGcggGUCCg -3' miRNA: 3'- gGgGCGGCCG-CgUACGaGGCaa-UAGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 238863 | 0.66 | 0.931552 |
Target: 5'- gCgCGCCGGCuGgGUGUcCCGcggGUCCg -3' miRNA: 3'- gGgGCGGCCG-CgUACGaGGCaa-UAGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 20707 | 0.66 | 0.931552 |
Target: 5'- gCCCGCCaaccuGGCGCGUGa--CGUgaugAUCg -3' miRNA: 3'- gGGGCGG-----CCGCGUACgagGCAa---UAGg -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 91041 | 0.66 | 0.931552 |
Target: 5'- aCCgUGUCGGCGUgguuuaugggAUGgauCUCgGUUGUCCg -3' miRNA: 3'- -GGgGCGGCCGCG----------UAC---GAGgCAAUAGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 87932 | 0.66 | 0.931552 |
Target: 5'- gCCgCGCCGG-GCAUGCUCU----UCa -3' miRNA: 3'- -GGgGCGGCCgCGUACGAGGcaauAGg -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 30355 | 0.66 | 0.931552 |
Target: 5'- gCCC-UCGGCGC-UGCUaCCGUgagcggCCg -3' miRNA: 3'- gGGGcGGCCGCGuACGA-GGCAaua---GG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 163798 | 0.66 | 0.93058 |
Target: 5'- aCCaCCGCCGGCcucaaccGCAUGCUgCCccuggacggcggcGUcacGUCCg -3' miRNA: 3'- -GG-GGCGGCCG-------CGUACGA-GG-------------CAa--UAGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 210299 | 0.66 | 0.926604 |
Target: 5'- gUCUCGuuaCCGuGUGCAgaGCUCCGU-GUCCg -3' miRNA: 3'- -GGGGC---GGC-CGCGUa-CGAGGCAaUAGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 4395 | 0.66 | 0.926604 |
Target: 5'- -gCCGCCGGCcc--GCUCCcgUAUCCc -3' miRNA: 3'- ggGGCGGCCGcguaCGAGGcaAUAGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 128710 | 0.66 | 0.926604 |
Target: 5'- aUCCGCCugGGCGagcGCUCgGUcAUCCu -3' miRNA: 3'- gGGGCGG--CCGCguaCGAGgCAaUAGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 54148 | 0.66 | 0.926604 |
Target: 5'- -aCCGCCGGCGUuggagagGCcgCCGcc-UCCg -3' miRNA: 3'- ggGGCGGCCGCGua-----CGa-GGCaauAGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 117618 | 0.66 | 0.926604 |
Target: 5'- cCCCCGuccuacCCGGCGCcguAUGCggCCuacgGUCCc -3' miRNA: 3'- -GGGGC------GGCCGCG---UACGa-GGcaa-UAGG- -5' |
|||||||
13940 | 3' | -57.7 | NC_003521.1 | + | 533 | 0.66 | 0.926604 |
Target: 5'- aUCCGCgcagcgagugUGGCGCGUGUuugCCGUgg-CCg -3' miRNA: 3'- gGGGCG----------GCCGCGUACGa--GGCAauaGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home