miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 3' -52.7 NC_003521.1 + 187296 0.66 0.995617
Target:  5'- --uUCGgcAGCCCgGUGG-GaGcgGCCg -3'
miRNA:   3'- acuAGCauUCGGGgCAUCaC-CuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 213734 0.66 0.994136
Target:  5'- aGA-CGgc-GCCgcagaaggCCGUGGUGGcgGCCa -3'
miRNA:   3'- aCUaGCauuCGG--------GGCAUCACCuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 105115 0.66 0.994136
Target:  5'- gGGUCGUGAucucGCCCagCGUGucgGGggGCCg -3'
miRNA:   3'- aCUAGCAUU----CGGG--GCAUca-CCuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 145258 0.66 0.994136
Target:  5'- cGcgCG-AGGCCUCG--GUGGcAUGCCg -3'
miRNA:   3'- aCuaGCaUUCGGGGCauCACC-UACGG- -5'
13941 3' -52.7 NC_003521.1 + 109254 0.66 0.993883
Target:  5'- aUGAUCaGgcucuGGCCcaccaCCGUGGUGGAgaccggguaggaggUGCCc -3'
miRNA:   3'- -ACUAG-Cau---UCGG-----GGCAUCACCU--------------ACGG- -5'
13941 3' -52.7 NC_003521.1 + 19395 0.66 0.993257
Target:  5'- ---cCGUGGGUCUCGUugccgagcacgcAGUGGuacGUGCCg -3'
miRNA:   3'- acuaGCAUUCGGGGCA------------UCACC---UACGG- -5'
13941 3' -52.7 NC_003521.1 + 143925 0.66 0.993164
Target:  5'- gUGGUCGUgguggaaGAGgUCCGU-GUGGAagcGCCg -3'
miRNA:   3'- -ACUAGCA-------UUCgGGGCAuCACCUa--CGG- -5'
13941 3' -52.7 NC_003521.1 + 204200 0.66 0.991184
Target:  5'- cGAgggCGUcAGGCagCCGUGGUGGAagagGCUu -3'
miRNA:   3'- aCUa--GCA-UUCGg-GGCAUCACCUa---CGG- -5'
13941 3' -52.7 NC_003521.1 + 93438 0.66 0.991184
Target:  5'- cGAcCGUcGAGCCCCGgUAGagGGAcGUCg -3'
miRNA:   3'- aCUaGCA-UUCGGGGC-AUCa-CCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 235231 0.66 0.991184
Target:  5'- ---aCGUAGGCCUCGUugguccgcaGGcUGGA-GCCg -3'
miRNA:   3'- acuaGCAUUCGGGGCA---------UC-ACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 216491 0.67 0.989974
Target:  5'- cGcUCGUAGGCCUCGUcugcGUG--UGCCa -3'
miRNA:   3'- aCuAGCAUUCGGGGCAu---CACcuACGG- -5'
13941 3' -52.7 NC_003521.1 + 60258 0.67 0.988638
Target:  5'- uUGAUCGacguGGCCCaCGaccUGGUGGG-GCUa -3'
miRNA:   3'- -ACUAGCau--UCGGG-GC---AUCACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 125851 0.67 0.988638
Target:  5'- gUGGUCGUAcAGCgCCuUGGUGGccGCg -3'
miRNA:   3'- -ACUAGCAU-UCGgGGcAUCACCuaCGg -5'
13941 3' -52.7 NC_003521.1 + 78897 0.67 0.988638
Target:  5'- gGGUCcacgcGGGCCUCGUAGacggGGAaGCCg -3'
miRNA:   3'- aCUAGca---UUCGGGGCAUCa---CCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 44666 0.67 0.988067
Target:  5'- aGGUUGUAGGCCgUGagGGUGGAauaacgcaccucgGCCu -3'
miRNA:   3'- aCUAGCAUUCGGgGCa-UCACCUa------------CGG- -5'
13941 3' -52.7 NC_003521.1 + 92585 0.67 0.987168
Target:  5'- cGGUUGgcGGCUCCGgguUGGGUGUg -3'
miRNA:   3'- aCUAGCauUCGGGGCaucACCUACGg -5'
13941 3' -52.7 NC_003521.1 + 102333 0.67 0.987168
Target:  5'- gUGcgCGUGGGCgCCGacgccggGGUGGcgGCa -3'
miRNA:   3'- -ACuaGCAUUCGgGGCa------UCACCuaCGg -5'
13941 3' -52.7 NC_003521.1 + 139250 0.67 0.983792
Target:  5'- aGGUgGcGGGCUCCGgguuGUGGAUGgCg -3'
miRNA:   3'- aCUAgCaUUCGGGGCau--CACCUACgG- -5'
13941 3' -52.7 NC_003521.1 + 135210 0.67 0.983792
Target:  5'- uUGAUgaaGUGGGCCUCGUccaccagcagcaGGUGGAaguucugGCCu -3'
miRNA:   3'- -ACUAg--CAUUCGGGGCA------------UCACCUa------CGG- -5'
13941 3' -52.7 NC_003521.1 + 133308 0.67 0.983792
Target:  5'- ---cUGcUGAGCCaCUGUGGUGGggGCUg -3'
miRNA:   3'- acuaGC-AUUCGG-GGCAUCACCuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.