miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 3' -51 NC_003521.1 + 139039 0.66 0.997835
Target:  5'- -gCCGCACgaggUGUaGAGGUCGuaGCAg -3'
miRNA:   3'- uaGGUGUGaa--AUAaUUCCGGCggCGU- -5'
13942 3' -51 NC_003521.1 + 137822 0.66 0.997835
Target:  5'- -gCUGCAU--UAUUAAGGCgcucaCGCCGCGg -3'
miRNA:   3'- uaGGUGUGaaAUAAUUCCG-----GCGGCGU- -5'
13942 3' -51 NC_003521.1 + 216125 0.66 0.997835
Target:  5'- -gCgGCGCg-----GAGGCCGCgGCAg -3'
miRNA:   3'- uaGgUGUGaaauaaUUCCGGCGgCGU- -5'
13942 3' -51 NC_003521.1 + 89490 0.66 0.997428
Target:  5'- cUCCGCGCUg----GAGGUCgGCCGg- -3'
miRNA:   3'- uAGGUGUGAaauaaUUCCGG-CGGCgu -5'
13942 3' -51 NC_003521.1 + 164035 0.66 0.997428
Target:  5'- -gCCGCuACcgUUGUUGccGCCGCCGUg -3'
miRNA:   3'- uaGGUG-UGa-AAUAAUucCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 25557 0.66 0.997428
Target:  5'- ---gACGCUgUUGUgcAGGCgGCCGCGg -3'
miRNA:   3'- uaggUGUGA-AAUAauUCCGgCGGCGU- -5'
13942 3' -51 NC_003521.1 + 157592 0.66 0.997428
Target:  5'- cUCCGCGCgagugcGUgcggGAGGCCGUaCGCu -3'
miRNA:   3'- uAGGUGUGaaa---UAa---UUCCGGCG-GCGu -5'
13942 3' -51 NC_003521.1 + 54277 0.66 0.997428
Target:  5'- cUCCACgGCgaa---GAGGCCGuuGCGg -3'
miRNA:   3'- uAGGUG-UGaaauaaUUCCGGCggCGU- -5'
13942 3' -51 NC_003521.1 + 223655 0.66 0.997294
Target:  5'- -gCCACACggcccgcgucGGGgCGCCGCGa -3'
miRNA:   3'- uaGGUGUGaaauaau---UCCgGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 59880 0.66 0.99696
Target:  5'- -gCCGCGgUcgccgccGGGGCCGCCGCc -3'
miRNA:   3'- uaGGUGUgAaauaa--UUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 197750 0.66 0.99696
Target:  5'- cUCCGCGCcg---UccGGcCCGCCGCGc -3'
miRNA:   3'- uAGGUGUGaaauaAuuCC-GGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 227907 0.66 0.99696
Target:  5'- gGUCCugACcaggcgUGccgcucGGGCCGCCGUg -3'
miRNA:   3'- -UAGGugUGaaaua-AU------UCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 118047 0.66 0.996858
Target:  5'- gGUCCGCAUUgcucuc-GGCCGCCa-- -3'
miRNA:   3'- -UAGGUGUGAaauaauuCCGGCGGcgu -5'
13942 3' -51 NC_003521.1 + 181525 0.66 0.996806
Target:  5'- gGUgUGCGCgaagacuagcGGGCCGCCGCGa -3'
miRNA:   3'- -UAgGUGUGaaauaau---UCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 129780 0.66 0.996646
Target:  5'- uGUCCcgcGCACgugcgcgccGAGGCCGaCCGCGu -3'
miRNA:   3'- -UAGG---UGUGaaauaa---UUCCGGC-GGCGU- -5'
13942 3' -51 NC_003521.1 + 78898 0.66 0.996422
Target:  5'- gGUCCACGCgggccucgUAgacGGGGaaGCCGCGc -3'
miRNA:   3'- -UAGGUGUGaa------AUaa-UUCCggCGGCGU- -5'
13942 3' -51 NC_003521.1 + 43394 0.66 0.996186
Target:  5'- cUCCACGCccagcgccGAGcGCuCGCCGCAg -3'
miRNA:   3'- uAGGUGUGaaauaa--UUC-CG-GCGGCGU- -5'
13942 3' -51 NC_003521.1 + 50286 0.66 0.995809
Target:  5'- gGUCCGcCGCUgcu-----GCCGCCGCAc -3'
miRNA:   3'- -UAGGU-GUGAaauaauucCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 212087 0.66 0.995809
Target:  5'- -aUCACAgcgauCUUUAUUAGGGCUGUCGa- -3'
miRNA:   3'- uaGGUGU-----GAAAUAAUUCCGGCGGCgu -5'
13942 3' -51 NC_003521.1 + 171112 0.66 0.995677
Target:  5'- -aCCGCGuaccuc-AGGGCCGCCGCc -3'
miRNA:   3'- uaGGUGUgaaauaaUUCCGGCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.