miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 3' -54 NC_003521.1 + 92226 0.66 0.984473
Target:  5'- cGCCGGguucCGCCcucgCCGCCACgggGUCc -3'
miRNA:   3'- aUGGCU----GCGGacaaGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 191053 0.66 0.984473
Target:  5'- gGCCGACGCucaguuCUGUUCCcGCgGCg---- -3'
miRNA:   3'- aUGGCUGCG------GACAAGG-CGgUGaauag -5'
13946 3' -54 NC_003521.1 + 129570 0.66 0.984473
Target:  5'- -cCCGACGauggCUGcUCCGCCGCg---- -3'
miRNA:   3'- auGGCUGCg---GACaAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 218296 0.66 0.982606
Target:  5'- cUGCgGACGCCg---CCGCCGCc---- -3'
miRNA:   3'- -AUGgCUGCGGacaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 114232 0.66 0.982606
Target:  5'- gGCCGGcCGCCUGccgucugUCUGCCucCUccgUGUCg -3'
miRNA:   3'- aUGGCU-GCGGACa------AGGCGGu-GA---AUAG- -5'
13946 3' -54 NC_003521.1 + 172583 0.66 0.982606
Target:  5'- gGCCGAgGCCUGcgCCaGCgGC--GUCa -3'
miRNA:   3'- aUGGCUgCGGACaaGG-CGgUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 104156 0.66 0.982606
Target:  5'- -cCCGGCGCCUGUguggcuucuugcUCUGUCGCc---- -3'
miRNA:   3'- auGGCUGCGGACA------------AGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 137878 0.66 0.982606
Target:  5'- -cCCGAgCGCCUGgaCCGCgACgccUCg -3'
miRNA:   3'- auGGCU-GCGGACaaGGCGgUGaauAG- -5'
13946 3' -54 NC_003521.1 + 131152 0.66 0.982606
Target:  5'- gGCCGAuCGCa---UCCGCCGCUacGUCu -3'
miRNA:   3'- aUGGCU-GCGgacaAGGCGGUGAa-UAG- -5'
13946 3' -54 NC_003521.1 + 62112 0.66 0.980575
Target:  5'- gACaGGCGCCgcgGUUCCGCgGCg---- -3'
miRNA:   3'- aUGgCUGCGGa--CAAGGCGgUGaauag -5'
13946 3' -54 NC_003521.1 + 224278 0.66 0.980575
Target:  5'- -cCCGAcCGCCgGgcCCGCCGCUg--- -3'
miRNA:   3'- auGGCU-GCGGaCaaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 5553 0.66 0.980575
Target:  5'- gGCCGcCGCCaucguUGUuccgUCCGUCGCU-GUCa -3'
miRNA:   3'- aUGGCuGCGG-----ACA----AGGCGGUGAaUAG- -5'
13946 3' -54 NC_003521.1 + 11444 0.66 0.980575
Target:  5'- gUACCGACGCCgacaUGUUUCuagGCUACUcGUa -3'
miRNA:   3'- -AUGGCUGCGG----ACAAGG---CGGUGAaUAg -5'
13946 3' -54 NC_003521.1 + 89022 0.66 0.980575
Target:  5'- cACCGGCGCCacggcggugaGUUCCucGCCGCUcAUg -3'
miRNA:   3'- aUGGCUGCGGa---------CAAGG--CGGUGAaUAg -5'
13946 3' -54 NC_003521.1 + 190044 0.66 0.980575
Target:  5'- cGCCGAuCGaCCaGgaCCGCCGCgcgGUCu -3'
miRNA:   3'- aUGGCU-GC-GGaCaaGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 211645 0.66 0.978372
Target:  5'- aGCCGGCGCCUGa-CgGCCuACUa--- -3'
miRNA:   3'- aUGGCUGCGGACaaGgCGG-UGAauag -5'
13946 3' -54 NC_003521.1 + 19005 0.66 0.978372
Target:  5'- -gUCGGCGCCaccgCCGCCACg-AUCg -3'
miRNA:   3'- auGGCUGCGGacaaGGCGGUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 124143 0.66 0.975989
Target:  5'- cGCCGcUGCCUccgCCGCCGCUg--- -3'
miRNA:   3'- aUGGCuGCGGAcaaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 173726 0.67 0.97342
Target:  5'- gUAUCGACGCCacuaCCGCCGg-UGUCa -3'
miRNA:   3'- -AUGGCUGCGGacaaGGCGGUgaAUAG- -5'
13946 3' -54 NC_003521.1 + 63302 0.67 0.97342
Target:  5'- gGCCGACgggGCCUG-UCCGCUGgUgggcGUCg -3'
miRNA:   3'- aUGGCUG---CGGACaAGGCGGUgAa---UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.