miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 3' -54 NC_003521.1 + 92125 0.69 0.93121
Target:  5'- cGCCGcCGuCCUGgUCCGCCGCc---- -3'
miRNA:   3'- aUGGCuGC-GGACaAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 28574 0.69 0.93121
Target:  5'- gGCCG-CGCCgggGUcgCUGCCGCUgcUCu -3'
miRNA:   3'- aUGGCuGCGGa--CAa-GGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 226412 0.69 0.93121
Target:  5'- --aCGACGCCgaGUgCCGCCGCUg--- -3'
miRNA:   3'- augGCUGCGGa-CAaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 19079 0.69 0.93121
Target:  5'- cGCUGACGCUgucGUUCCGCUug--AUCa -3'
miRNA:   3'- aUGGCUGCGGa--CAAGGCGGugaaUAG- -5'
13946 3' -54 NC_003521.1 + 74849 0.69 0.926004
Target:  5'- gGCCgcggGACGCCgcg-CCGCCGCUccGUCg -3'
miRNA:   3'- aUGG----CUGCGGacaaGGCGGUGAa-UAG- -5'
13946 3' -54 NC_003521.1 + 144176 0.69 0.926004
Target:  5'- cGCCGGCGCCgccugCCGCgCGCUg--- -3'
miRNA:   3'- aUGGCUGCGGacaa-GGCG-GUGAauag -5'
13946 3' -54 NC_003521.1 + 111658 0.69 0.920561
Target:  5'- cGCCGcACGCCg--UCUGCUACgugAUCg -3'
miRNA:   3'- aUGGC-UGCGGacaAGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 218894 0.69 0.920561
Target:  5'- gGCCGugGCCgcuuaCCGCCGCg---- -3'
miRNA:   3'- aUGGCugCGGacaa-GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 217599 0.69 0.914883
Target:  5'- gACCGGcCGCCg--UCCGCCACc---- -3'
miRNA:   3'- aUGGCU-GCGGacaAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 60168 0.69 0.914883
Target:  5'- cGCCaACGCCUGgagCCGCUACa---- -3'
miRNA:   3'- aUGGcUGCGGACaa-GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 59869 0.69 0.908971
Target:  5'- cGCCGGgGCCg---CCGCCACUa--- -3'
miRNA:   3'- aUGGCUgCGGacaaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 97458 0.69 0.908971
Target:  5'- gACCGuCGUC-GUUgCCGCCGCUUcUCa -3'
miRNA:   3'- aUGGCuGCGGaCAA-GGCGGUGAAuAG- -5'
13946 3' -54 NC_003521.1 + 120439 0.69 0.908971
Target:  5'- cACCGAUGCUcGcgUCCGCCGCa---- -3'
miRNA:   3'- aUGGCUGCGGaCa-AGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 201522 0.69 0.908971
Target:  5'- cGCCGACGaaugGUUCCGCUACg---- -3'
miRNA:   3'- aUGGCUGCgga-CAAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 137972 0.69 0.908971
Target:  5'- aUGCCGACGUggugcgCUGUgUCCGCgCGCagGUCg -3'
miRNA:   3'- -AUGGCUGCG------GACA-AGGCG-GUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 239794 0.69 0.908971
Target:  5'- cGCCGACGaaugGUUCCGCUACg---- -3'
miRNA:   3'- aUGGCUGCgga-CAAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 153025 0.7 0.902826
Target:  5'- aGgCGACGCC-GUUCCGCgCGCUg--- -3'
miRNA:   3'- aUgGCUGCGGaCAAGGCG-GUGAauag -5'
13946 3' -54 NC_003521.1 + 188198 0.7 0.895149
Target:  5'- gGCCGACGCaggaucacccgGUcCUGCCACUcGUCg -3'
miRNA:   3'- aUGGCUGCGga---------CAaGGCGGUGAaUAG- -5'
13946 3' -54 NC_003521.1 + 122236 0.7 0.889849
Target:  5'- gUGCCGGCGaCUGagcgCCGCCAC--GUCg -3'
miRNA:   3'- -AUGGCUGCgGACaa--GGCGGUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 206842 0.7 0.889849
Target:  5'- aGCCGGgGCCUGUcgugccCCGUCGCccUAUCg -3'
miRNA:   3'- aUGGCUgCGGACAa-----GGCGGUGa-AUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.