miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 164933 0.69 0.627171
Target:  5'- aCCGggccCCUCCuCCGGcggcUCGCgUCGCcggagaGGGCc -3'
miRNA:   3'- -GGCa---GGAGG-GGCC----AGCGgAGCG------UCCG- -5'
13947 3' -62.4 NC_003521.1 + 160314 0.67 0.737923
Target:  5'- gCCG-CCUCCCCGGg-GUCaUCGUuguGGUu -3'
miRNA:   3'- -GGCaGGAGGGGCCagCGG-AGCGu--CCG- -5'
13947 3' -62.4 NC_003521.1 + 160260 0.7 0.571252
Target:  5'- gCGcUUCUCCCgGGUUGCCU-GguGGUa -3'
miRNA:   3'- gGC-AGGAGGGgCCAGCGGAgCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 158841 0.68 0.655249
Target:  5'- uCgGUagaCUUCUCaGaguuUCGCCUCGCAGGCg -3'
miRNA:   3'- -GgCAg--GAGGGGcC----AGCGGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 157556 0.66 0.763477
Target:  5'- cCCG-CCUCCCCccguacgcGGcCGCCgUUGCcccggaaAGGCg -3'
miRNA:   3'- -GGCaGGAGGGG--------CCaGCGG-AGCG-------UCCG- -5'
13947 3' -62.4 NC_003521.1 + 154376 0.7 0.524686
Target:  5'- uCUGUCgCgUCCUCGGUCGCCgcugCcgccaaucaggagGCGGGCa -3'
miRNA:   3'- -GGCAG-G-AGGGGCCAGCGGa---G-------------CGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 153431 0.69 0.59912
Target:  5'- -gGUCagcagCagCCGGUCGCgCUCGUAGGCc -3'
miRNA:   3'- ggCAGga---Gg-GGCCAGCG-GAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 152599 0.66 0.803891
Target:  5'- aCGauggCCUCCUCGG-CGCCcuggUuggucaccaggcggCGCAGGCg -3'
miRNA:   3'- gGCa---GGAGGGGCCaGCGG----A--------------GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 151526 0.67 0.728952
Target:  5'- cUCGUCgcgCUCCUCGucGUCGCCgUCcCAGGCc -3'
miRNA:   3'- -GGCAG---GAGGGGC--CAGCGG-AGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 150172 0.66 0.78148
Target:  5'- aUCGUCCUCgUCGGagGaggggugggCGCGGGCg -3'
miRNA:   3'- -GGCAGGAGgGGCCagCgga------GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 149170 0.66 0.755626
Target:  5'- gUCGUCCgUCUCGGcgCGCgUCGCcaccGGCg -3'
miRNA:   3'- -GGCAGGaGGGGCCa-GCGgAGCGu---CCG- -5'
13947 3' -62.4 NC_003521.1 + 146916 0.72 0.439033
Target:  5'- gCCGUCCUCCUCGccGUCGUCgUgGCcgGGGCc -3'
miRNA:   3'- -GGCAGGAGGGGC--CAGCGG-AgCG--UCCG- -5'
13947 3' -62.4 NC_003521.1 + 142535 0.66 0.795694
Target:  5'- uCC-UCUUCCCUGaggagugacggcuuGUCGCC-CGCcAGGCu -3'
miRNA:   3'- -GGcAGGAGGGGC--------------CAGCGGaGCG-UCCG- -5'
13947 3' -62.4 NC_003521.1 + 142254 0.71 0.481367
Target:  5'- cCCGcUCCUCCUCGGcCGaCUCGggcuCGGGCu -3'
miRNA:   3'- -GGC-AGGAGGGGCCaGCgGAGC----GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 141409 0.66 0.772965
Target:  5'- gCCGUUCUUCUCGcg-GCCgaaacaggugUCGCGGGCg -3'
miRNA:   3'- -GGCAGGAGGGGCcagCGG----------AGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 140869 0.66 0.789883
Target:  5'- aCGgCCUCCUCGaagcggagCGUCUCGCcGGCc -3'
miRNA:   3'- gGCaGGAGGGGCca------GCGGAGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 137503 0.68 0.655249
Target:  5'- gCCGUCggCCCCGGcCGgUgCGCGGGg -3'
miRNA:   3'- -GGCAGgaGGGGCCaGCgGaGCGUCCg -5'
13947 3' -62.4 NC_003521.1 + 135659 0.7 0.552845
Target:  5'- cCCGcCCgCCUCGGcacgguuuggCGCC-CGCGGGCg -3'
miRNA:   3'- -GGCaGGaGGGGCCa---------GCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 135364 0.73 0.391167
Target:  5'- gCCGU-CUCCgCGGcgguuaUCGCC-CGCGGGCg -3'
miRNA:   3'- -GGCAgGAGGgGCC------AGCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 135017 0.66 0.772965
Target:  5'- gUCGcCCUUCUCGGUgaaGCUgUGCAGGUg -3'
miRNA:   3'- -GGCaGGAGGGGCCAg--CGGaGCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.