miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 17029 1.06 0.00687
Target:  5'- aAAACCGACCUGCUGCAUGGCGAAGCGc -3'
miRNA:   3'- -UUUGGCUGGACGACGUACCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 187861 0.79 0.347017
Target:  5'- -cACCG-CCUGUUGCAUGGCGGucaccaccucgGGCGg -3'
miRNA:   3'- uuUGGCuGGACGACGUACCGCU-----------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 224420 0.78 0.370513
Target:  5'- -cGCCGGCCaggcGCUGCGUGGUGGgcgAGCGg -3'
miRNA:   3'- uuUGGCUGGa---CGACGUACCGCU---UCGC- -5'
13948 5' -55.7 NC_003521.1 + 156167 0.77 0.447225
Target:  5'- uAGCCGGCCUGCUcGCAgGGCGu-GCGc -3'
miRNA:   3'- uUUGGCUGGACGA-CGUaCCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 153857 0.76 0.456286
Target:  5'- cAACCuGGCgCUGCUGCugcagGUGGUGGAGCGg -3'
miRNA:   3'- uUUGG-CUG-GACGACG-----UACCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 117412 0.75 0.512576
Target:  5'- gGAGCCGGCgcgCUGCgGCGUGGCGGuggaagaggaGGCGg -3'
miRNA:   3'- -UUUGGCUG---GACGaCGUACCGCU----------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 59610 0.75 0.531981
Target:  5'- -cGCCG-CCUGCaGCGUGGCGuGGCu -3'
miRNA:   3'- uuUGGCuGGACGaCGUACCGCuUCGc -5'
13948 5' -55.7 NC_003521.1 + 44508 0.74 0.571522
Target:  5'- cAACCGGCCcaugcGCUGCAUGGCcagcaucAAGCGg -3'
miRNA:   3'- uUUGGCUGGa----CGACGUACCGc------UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 98403 0.74 0.585539
Target:  5'- ---gCGGCgCUGCUGCuguuauuguccggugGUGGCGggGCGg -3'
miRNA:   3'- uuugGCUG-GACGACG---------------UACCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 62722 0.73 0.662258
Target:  5'- uAGACgGGCC-GCUGCuUGGCGuAGGCGu -3'
miRNA:   3'- -UUUGgCUGGaCGACGuACCGC-UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 44706 0.73 0.662258
Target:  5'- -cACCG-CCUcCUGCGUGGUGAagGGCGg -3'
miRNA:   3'- uuUGGCuGGAcGACGUACCGCU--UCGC- -5'
13948 5' -55.7 NC_003521.1 + 149819 0.73 0.621833
Target:  5'- uGACCGACCUGCUGCAgcuGCaacAGCa -3'
miRNA:   3'- uUUGGCUGGACGACGUac-CGcu-UCGc -5'
13948 5' -55.7 NC_003521.1 + 57539 0.72 0.712187
Target:  5'- -cACCGACCUGCUGC-UGG-GucGCu -3'
miRNA:   3'- uuUGGCUGGACGACGuACCgCuuCGc -5'
13948 5' -55.7 NC_003521.1 + 159822 0.71 0.741416
Target:  5'- cGGACCGGCCgugaggcGCUGCGcggaGGCGcGAGCGu -3'
miRNA:   3'- -UUUGGCUGGa------CGACGUa---CCGC-UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 156670 0.71 0.760451
Target:  5'- uAGgUGACCaGCgGCAgggUGGCGAAGCGg -3'
miRNA:   3'- uUUgGCUGGaCGaCGU---ACCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 218676 0.71 0.731755
Target:  5'- -cGCUGGCCaUGCUGCGcGGCGuGGCc -3'
miRNA:   3'- uuUGGCUGG-ACGACGUaCCGCuUCGc -5'
13948 5' -55.7 NC_003521.1 + 73092 0.71 0.760451
Target:  5'- cAGGCCGucgcggugaGCCUGCUGCugcugGUGGUGGuaGGCGu -3'
miRNA:   3'- -UUUGGC---------UGGACGACG-----UACCGCU--UCGC- -5'
13948 5' -55.7 NC_003521.1 + 56246 0.71 0.741416
Target:  5'- uGGACCGGcugcggccCCUGCacaucgGCGUGGUGggGCu -3'
miRNA:   3'- -UUUGGCU--------GGACGa-----CGUACCGCuuCGc -5'
13948 5' -55.7 NC_003521.1 + 85600 0.71 0.727866
Target:  5'- -cGCCGGCCUGCgGCGggccgcgggccaaGGCuGGAGCGa -3'
miRNA:   3'- uuUGGCUGGACGaCGUa------------CCG-CUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 239792 0.7 0.805942
Target:  5'- -cGCCGGCCaucugGCUGCGcGGCGugauGCGc -3'
miRNA:   3'- uuUGGCUGGa----CGACGUaCCGCuu--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.