miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 3' -55.4 NC_003521.1 + 73566 0.66 0.97423
Target:  5'- cGAGcAGCCAGGUCuGCuCG-GCG-UCCu -3'
miRNA:   3'- -CUU-UCGGUCCAG-CGuGCuCGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 88739 0.66 0.97423
Target:  5'- cAGAGCC-GG-CGCACGucgccGUGGUCCu -3'
miRNA:   3'- cUUUCGGuCCaGCGUGCu----CGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 27121 0.66 0.97423
Target:  5'- gGAGAGCUucGGuUCGCGCGucauCGGUCUGg -3'
miRNA:   3'- -CUUUCGGu-CC-AGCGUGCuc--GCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 165783 0.66 0.972663
Target:  5'- cGAAGGCCAGcccgcuggcgcugccGUCGCAguAGgGGUCCu -3'
miRNA:   3'- -CUUUCGGUC---------------CAGCGUgcUCgCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 77882 0.66 0.971581
Target:  5'- --cGGCCGGcGcCGuCACGGGCGcgCCc -3'
miRNA:   3'- cuuUCGGUC-CaGC-GUGCUCGCuaGGc -5'
13950 3' -55.4 NC_003521.1 + 27384 0.66 0.971581
Target:  5'- gGggGGCCAGG-C-CACGGG-GAUCuCGu -3'
miRNA:   3'- -CuuUCGGUCCaGcGUGCUCgCUAG-GC- -5'
13950 3' -55.4 NC_003521.1 + 103065 0.66 0.971581
Target:  5'- -cAGGgCGGGU-GCGCGGGCGAgggCUGc -3'
miRNA:   3'- cuUUCgGUCCAgCGUGCUCGCUa--GGC- -5'
13950 3' -55.4 NC_003521.1 + 192482 0.66 0.971581
Target:  5'- ---cGCCGGGUCGCAagaaacAG-GGUCCGc -3'
miRNA:   3'- cuuuCGGUCCAGCGUgc----UCgCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 215841 0.66 0.971581
Target:  5'- -cGAGCCcGGUUG-ACGGcGCGGUCCc -3'
miRNA:   3'- cuUUCGGuCCAGCgUGCU-CGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 16934 0.66 0.971581
Target:  5'- -cGGGCCAGGUCaGgAgGAGCGGUg-- -3'
miRNA:   3'- cuUUCGGUCCAG-CgUgCUCGCUAggc -5'
13950 3' -55.4 NC_003521.1 + 148414 0.66 0.971581
Target:  5'- aGGGAGCCAuGGUgcgggcggcCGCGCcGGCGGcUCCa -3'
miRNA:   3'- -CUUUCGGU-CCA---------GCGUGcUCGCU-AGGc -5'
13950 3' -55.4 NC_003521.1 + 133379 0.66 0.971581
Target:  5'- ---cGCCGGcacaGCGCG-GCGGUCCGc -3'
miRNA:   3'- cuuuCGGUCcag-CGUGCuCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 219453 0.66 0.971306
Target:  5'- --cAGCUcGGUCagcugcgGCACGAGCGA-CCa -3'
miRNA:   3'- cuuUCGGuCCAG-------CGUGCUCGCUaGGc -5'
13950 3' -55.4 NC_003521.1 + 19169 0.66 0.969901
Target:  5'- -cGGGCCAGG-CGUGCGAGgGGaagaugcacgacacgUCCa -3'
miRNA:   3'- cuUUCGGUCCaGCGUGCUCgCU---------------AGGc -5'
13950 3' -55.4 NC_003521.1 + 70300 0.66 0.968743
Target:  5'- aGAAAGCggugCAGGUCGCccagcaGCGAGgCGGUgacgCCGu -3'
miRNA:   3'- -CUUUCG----GUCCAGCG------UGCUC-GCUA----GGC- -5'
13950 3' -55.4 NC_003521.1 + 119051 0.66 0.968743
Target:  5'- ---cGUCGGGgUGCugGAGCGcUCCu -3'
miRNA:   3'- cuuuCGGUCCaGCGugCUCGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 166870 0.66 0.968743
Target:  5'- -cGGGCgCAGGUCGUacaucaaguccGCGGGCGcgCgGg -3'
miRNA:   3'- cuUUCG-GUCCAGCG-----------UGCUCGCuaGgC- -5'
13950 3' -55.4 NC_003521.1 + 101745 0.66 0.965708
Target:  5'- gGAAGGCCggcAGGUCGUGCG-GCGGa--- -3'
miRNA:   3'- -CUUUCGG---UCCAGCGUGCuCGCUaggc -5'
13950 3' -55.4 NC_003521.1 + 100496 0.66 0.962471
Target:  5'- ---cGCCAGGUgGCaccGCGGGCG-UCgGa -3'
miRNA:   3'- cuuuCGGUCCAgCG---UGCUCGCuAGgC- -5'
13950 3' -55.4 NC_003521.1 + 187492 0.66 0.962471
Target:  5'- --cGGCguGGUgGuCACGA-CGAUCCGa -3'
miRNA:   3'- cuuUCGguCCAgC-GUGCUcGCUAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.