miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 3' -55.4 NC_003521.1 + 44831 0.68 0.933818
Target:  5'- aGAAAGUaCAGGUCGUugaGGGCG-UCCu -3'
miRNA:   3'- -CUUUCG-GUCCAGCGug-CUCGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 142132 0.72 0.757516
Target:  5'- uGAGGGCCuGGUgGCugGugaGGCGGUgCCGg -3'
miRNA:   3'- -CUUUCGGuCCAgCGugC---UCGCUA-GGC- -5'
13950 3' -55.4 NC_003521.1 + 215841 0.66 0.971581
Target:  5'- -cGAGCCcGGUUG-ACGGcGCGGUCCc -3'
miRNA:   3'- cuUUCGGuCCAGCgUGCU-CGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 67356 0.66 0.959028
Target:  5'- uAGGGCUugAGGUCGUAgCGcGUGAUCUGg -3'
miRNA:   3'- cUUUCGG--UCCAGCGU-GCuCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 201583 0.67 0.940416
Target:  5'- --uGGCCaccagcacgauccagGGGUCGCGCG-GCGAgagCUGg -3'
miRNA:   3'- cuuUCGG---------------UCCAGCGUGCuCGCUa--GGC- -5'
13950 3' -55.4 NC_003521.1 + 20962 0.74 0.660556
Target:  5'- ---cGCCAGGUUG-GCGGGCGGUUCGc -3'
miRNA:   3'- cuuuCGGUCCAGCgUGCUCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 101273 0.67 0.956861
Target:  5'- ---cGCCAGGacgCGCcccuguccucccucaGCGAGCGAgaacgCCGu -3'
miRNA:   3'- cuuuCGGUCCa--GCG---------------UGCUCGCUa----GGC- -5'
13950 3' -55.4 NC_003521.1 + 29319 0.85 0.169357
Target:  5'- gGAAGGCCAGGUCGUugaGCGuGUGGUCCGu -3'
miRNA:   3'- -CUUUCGGUCCAGCG---UGCuCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 19475 1.09 0.005761
Target:  5'- cGAAAGCCAGGUCGCACGAGCGAUCCGu -3'
miRNA:   3'- -CUUUCGGUCCAGCGUGCUCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 144226 0.69 0.880874
Target:  5'- gGAAGGCCGGGUgguaGCACucGCGcagCCGg -3'
miRNA:   3'- -CUUUCGGUCCAg---CGUGcuCGCua-GGC- -5'
13950 3' -55.4 NC_003521.1 + 191096 0.67 0.943108
Target:  5'- aGGGAGCCGGGUCGUccaGCGAG-GAc--- -3'
miRNA:   3'- -CUUUCGGUCCAGCG---UGCUCgCUaggc -5'
13950 3' -55.4 NC_003521.1 + 142855 0.67 0.951504
Target:  5'- gGGAGGCgGGGagGCGgGGGCGG-CCa -3'
miRNA:   3'- -CUUUCGgUCCagCGUgCUCGCUaGGc -5'
13950 3' -55.4 NC_003521.1 + 137538 0.66 0.959028
Target:  5'- ----uCCAGGUCGCugGGGCcc-CCGc -3'
miRNA:   3'- cuuucGGUCCAGCGugCUCGcuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 19169 0.66 0.969901
Target:  5'- -cGGGCCAGG-CGUGCGAGgGGaagaugcacgacacgUCCa -3'
miRNA:   3'- cuUUCGGUCCaGCGUGCUCgCU---------------AGGc -5'
13950 3' -55.4 NC_003521.1 + 77882 0.66 0.971581
Target:  5'- --cGGCCGGcGcCGuCACGGGCGcgCCc -3'
miRNA:   3'- cuuUCGGUC-CaGC-GUGCUCGCuaGGc -5'
13950 3' -55.4 NC_003521.1 + 17414 0.69 0.887637
Target:  5'- --uGGCCagggaGGGUCGgGCGAaGCGcgCCGg -3'
miRNA:   3'- cuuUCGG-----UCCAGCgUGCU-CGCuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 73425 0.72 0.757516
Target:  5'- ---cGCCAGGUCGCAggcCGAgGCGGcgCCGc -3'
miRNA:   3'- cuuuCGGUCCAGCGU---GCU-CGCUa-GGC- -5'
13950 3' -55.4 NC_003521.1 + 41046 0.7 0.844004
Target:  5'- cGGGAGuCCGGaGUCGC-CGAGCu-UCCGg -3'
miRNA:   3'- -CUUUC-GGUC-CAGCGuGCUCGcuAGGC- -5'
13950 3' -55.4 NC_003521.1 + 55937 0.67 0.955374
Target:  5'- uGAAGcCCAGG-CGCAUGAGCa--CCGu -3'
miRNA:   3'- cUUUC-GGUCCaGCGUGCUCGcuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 115773 0.69 0.90052
Target:  5'- aGAAGGCCGGuGUgacggCGCACGAaGCGcgucagcaGUCCGc -3'
miRNA:   3'- -CUUUCGGUC-CA-----GCGUGCU-CGC--------UAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.