miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 3' -55.4 NC_003521.1 + 19475 1.09 0.005761
Target:  5'- cGAAAGCCAGGUCGCACGAGCGAUCCGu -3'
miRNA:   3'- -CUUUCGGUCCAGCGUGCUCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 201583 0.67 0.940416
Target:  5'- --uGGCCaccagcacgauccagGGGUCGCGCG-GCGAgagCUGg -3'
miRNA:   3'- cuuUCGG---------------UCCAGCGUGCuCGCUa--GGC- -5'
13950 3' -55.4 NC_003521.1 + 137492 0.67 0.943108
Target:  5'- --cGGCC-GGU-GCGCGGGgGAUCUGa -3'
miRNA:   3'- cuuUCGGuCCAgCGUGCUCgCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 27121 0.66 0.97423
Target:  5'- gGAGAGCUucGGuUCGCGCGucauCGGUCUGg -3'
miRNA:   3'- -CUUUCGGu-CC-AGCGUGCuc--GCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 73425 0.72 0.757516
Target:  5'- ---cGCCAGGUCGCAggcCGAgGCGGcgCCGc -3'
miRNA:   3'- cuuuCGGUCCAGCGU---GCU-CGCUa-GGC- -5'
13950 3' -55.4 NC_003521.1 + 92445 0.72 0.775918
Target:  5'- gGGAGGCCAGGgcaUCGCcccgaccccCGGGCGAgCCGg -3'
miRNA:   3'- -CUUUCGGUCC---AGCGu--------GCUCGCUaGGC- -5'
13950 3' -55.4 NC_003521.1 + 41046 0.7 0.844004
Target:  5'- cGGGAGuCCGGaGUCGC-CGAGCu-UCCGg -3'
miRNA:   3'- -CUUUC-GGUC-CAGCGuGCUCGcuAGGC- -5'
13950 3' -55.4 NC_003521.1 + 105321 0.7 0.851767
Target:  5'- gGAucGCCccuGGGgcugcucgCGCACGGGCGggCCGu -3'
miRNA:   3'- -CUuuCGG---UCCa-------GCGUGCUCGCuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 17414 0.69 0.887637
Target:  5'- --uGGCCagggaGGGUCGgGCGAaGCGcgCCGg -3'
miRNA:   3'- cuuUCGG-----UCCAGCgUGCU-CGCuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 4672 0.67 0.938576
Target:  5'- cGAAAGCCgggaggaggAGGUC-CACGAGCGGg--- -3'
miRNA:   3'- -CUUUCGG---------UCCAGcGUGCUCGCUaggc -5'
13950 3' -55.4 NC_003521.1 + 179821 0.68 0.928834
Target:  5'- uGGGGCCAGuGUCGCAgggaggaagcCGAGCGGgaCGa -3'
miRNA:   3'- cUUUCGGUC-CAGCGU----------GCUCGCUagGC- -5'
13950 3' -55.4 NC_003521.1 + 144226 0.69 0.880874
Target:  5'- gGAAGGCCGGGUgguaGCACucGCGcagCCGg -3'
miRNA:   3'- -CUUUCGGUCCAg---CGUGcuCGCua-GGC- -5'
13950 3' -55.4 NC_003521.1 + 29319 0.85 0.169357
Target:  5'- gGAAGGCCAGGUCGUugaGCGuGUGGUCCGu -3'
miRNA:   3'- -CUUUCGGUCCAGCG---UGCuCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 44831 0.68 0.933818
Target:  5'- aGAAAGUaCAGGUCGUugaGGGCG-UCCu -3'
miRNA:   3'- -CUUUCG-GUCCAGCGug-CUCGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 20962 0.74 0.660556
Target:  5'- ---cGCCAGGUUG-GCGGGCGGUUCGc -3'
miRNA:   3'- cuuuCGGUCCAGCgUGCUCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 65282 0.7 0.851767
Target:  5'- -cGGGCCAGGaUGCGCGugcuaggggcGCGGUCCa -3'
miRNA:   3'- cuUUCGGUCCaGCGUGCu---------CGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 90134 0.67 0.938576
Target:  5'- ---cGCCAGGuggcgUCGUAUGGGCGAcaugCCa -3'
miRNA:   3'- cuuuCGGUCC-----AGCGUGCUCGCUa---GGc -5'
13950 3' -55.4 NC_003521.1 + 191096 0.67 0.943108
Target:  5'- aGGGAGCCGGGUCGUccaGCGAG-GAc--- -3'
miRNA:   3'- -CUUUCGGUCCAGCG---UGCUCgCUaggc -5'
13950 3' -55.4 NC_003521.1 + 142132 0.72 0.757516
Target:  5'- uGAGGGCCuGGUgGCugGugaGGCGGUgCCGg -3'
miRNA:   3'- -CUUUCGGuCCAgCGugC---UCGCUA-GGC- -5'
13950 3' -55.4 NC_003521.1 + 201282 0.7 0.844004
Target:  5'- --cGGCgGGG-CGC-CGGGCGGUCCu -3'
miRNA:   3'- cuuUCGgUCCaGCGuGCUCGCUAGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.