miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 3' -55.4 NC_003521.1 + 218374 0.67 0.944858
Target:  5'- -uGAGCCAGGcgugccgcgugaaGCGCGGGCGGUacUCGg -3'
miRNA:   3'- cuUUCGGUCCag-----------CGUGCUCGCUA--GGC- -5'
13950 3' -55.4 NC_003521.1 + 191096 0.67 0.943108
Target:  5'- aGGGAGCCGGGUCGUccaGCGAG-GAc--- -3'
miRNA:   3'- -CUUUCGGUCCAGCG---UGCUCgCUaggc -5'
13950 3' -55.4 NC_003521.1 + 137492 0.67 0.943108
Target:  5'- --cGGCC-GGU-GCGCGGGgGAUCUGa -3'
miRNA:   3'- cuuUCGGuCCAgCGUGCUCgCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 47385 0.67 0.943108
Target:  5'- cGAAGGgucCCAGGgcgcUGCGCGAGCGGagCUGg -3'
miRNA:   3'- -CUUUC---GGUCCa---GCGUGCUCGCUa-GGC- -5'
13950 3' -55.4 NC_003521.1 + 239732 0.67 0.940416
Target:  5'- --uGGCCaccagcacgauccagGGGUCGCGCG-GCGAgagCUGg -3'
miRNA:   3'- cuuUCGG---------------UCCAGCGUGCuCGCUa--GGC- -5'
13950 3' -55.4 NC_003521.1 + 201583 0.67 0.940416
Target:  5'- --uGGCCaccagcacgauccagGGGUCGCGCG-GCGAgagCUGg -3'
miRNA:   3'- cuuUCGG---------------UCCAGCGUGCuCGCUa--GGC- -5'
13950 3' -55.4 NC_003521.1 + 145282 0.67 0.938576
Target:  5'- --cGGCCAGcUCGCGCGccGGCGucucgCCGg -3'
miRNA:   3'- cuuUCGGUCcAGCGUGC--UCGCua---GGC- -5'
13950 3' -55.4 NC_003521.1 + 4672 0.67 0.938576
Target:  5'- cGAAAGCCgggaggaggAGGUC-CACGAGCGGg--- -3'
miRNA:   3'- -CUUUCGG---------UCCAGcGUGCUCGCUaggc -5'
13950 3' -55.4 NC_003521.1 + 90134 0.67 0.938576
Target:  5'- ---cGCCAGGuggcgUCGUAUGGGCGAcaugCCa -3'
miRNA:   3'- cuuuCGGUCC-----AGCGUGCUCGCUa---GGc -5'
13950 3' -55.4 NC_003521.1 + 34142 0.67 0.93811
Target:  5'- cAGGGCCAGGcccacgCGCACGAaggccuugaggucGCGggCCa -3'
miRNA:   3'- cUUUCGGUCCa-----GCGUGCU-------------CGCuaGGc -5'
13950 3' -55.4 NC_003521.1 + 44831 0.68 0.933818
Target:  5'- aGAAAGUaCAGGUCGUugaGGGCG-UCCu -3'
miRNA:   3'- -CUUUCG-GUCCAGCGug-CUCGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 179821 0.68 0.928834
Target:  5'- uGGGGCCAGuGUCGCAgggaggaagcCGAGCGGgaCGa -3'
miRNA:   3'- cUUUCGGUC-CAGCGU----------GCUCGCUagGC- -5'
13950 3' -55.4 NC_003521.1 + 27476 0.68 0.918185
Target:  5'- --uGGCCAGGUcCGuCAUGuGGCGGUCgGa -3'
miRNA:   3'- cuuUCGGUCCA-GC-GUGC-UCGCUAGgC- -5'
13950 3' -55.4 NC_003521.1 + 138702 0.68 0.916509
Target:  5'- -uGAGCCuGGgcgGCACGGGCGcuggcugguggugcGUCCGg -3'
miRNA:   3'- cuUUCGGuCCag-CGUGCUCGC--------------UAGGC- -5'
13950 3' -55.4 NC_003521.1 + 53461 0.68 0.912521
Target:  5'- --cGGCCAGGgCGUccuccaGCGAGCGcUCCu -3'
miRNA:   3'- cuuUCGGUCCaGCG------UGCUCGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 129727 0.68 0.912521
Target:  5'- --cGGCCc-GUCGaCGCGAGCGcGUCCGc -3'
miRNA:   3'- cuuUCGGucCAGC-GUGCUCGC-UAGGC- -5'
13950 3' -55.4 NC_003521.1 + 164751 0.68 0.906632
Target:  5'- gGggGGCaucgcGGUCGC-CGGGCGAaCCa -3'
miRNA:   3'- -CuuUCGgu---CCAGCGuGCUCGCUaGGc -5'
13950 3' -55.4 NC_003521.1 + 136916 0.68 0.906632
Target:  5'- --cGGCgCGGGUCGCACG-GCGuUgCGg -3'
miRNA:   3'- cuuUCG-GUCCAGCGUGCuCGCuAgGC- -5'
13950 3' -55.4 NC_003521.1 + 115773 0.69 0.90052
Target:  5'- aGAAGGCCGGuGUgacggCGCACGAaGCGcgucagcaGUCCGc -3'
miRNA:   3'- -CUUUCGGUC-CA-----GCGUGCU-CGC--------UAGGC- -5'
13950 3' -55.4 NC_003521.1 + 109490 0.69 0.894187
Target:  5'- ---cGCCAGG-CGCuccaGCGAGUGGUCgCGc -3'
miRNA:   3'- cuuuCGGUCCaGCG----UGCUCGCUAG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.