miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 214012 0.66 0.780733
Target:  5'- -cUACGU-GGCCGCCaccacggccuucugcGGCGCCGUcugGCUg -3'
miRNA:   3'- acGUGCAgCCGGUGG---------------UCGCGGCA---CGA- -5'
13950 5' -61.7 NC_003521.1 + 100129 0.66 0.777241
Target:  5'- --gACGgUGGCCGCCAuGCGCCagcUGCUc -3'
miRNA:   3'- acgUGCaGCCGGUGGU-CGCGGc--ACGA- -5'
13950 5' -61.7 NC_003521.1 + 29445 0.66 0.777241
Target:  5'- aGCGCGUgGGCCAguucaugauCC-GCGaCCG-GCUg -3'
miRNA:   3'- aCGUGCAgCCGGU---------GGuCGC-GGCaCGA- -5'
13950 5' -61.7 NC_003521.1 + 31822 0.66 0.777241
Target:  5'- aGCGCcgucUCGGCC-CgGGCGCCGaaggugGCg -3'
miRNA:   3'- aCGUGc---AGCCGGuGgUCGCGGCa-----CGa -5'
13950 5' -61.7 NC_003521.1 + 127318 0.66 0.777241
Target:  5'- aUGUugGCGUUGGUCAgCGGCuGCCGgucgGCc -3'
miRNA:   3'- -ACG--UGCAGCCGGUgGUCG-CGGCa---CGa -5'
13950 5' -61.7 NC_003521.1 + 150772 0.66 0.777241
Target:  5'- aGCGCGUCGGCgucCCGGaGCUGgagGCc -3'
miRNA:   3'- aCGUGCAGCCGgu-GGUCgCGGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 127293 0.66 0.777241
Target:  5'- aGCGCGaCGGgCACCgcggcGGCGUCGUcggGCa -3'
miRNA:   3'- aCGUGCaGCCgGUGG-----UCGCGGCA---CGa -5'
13950 5' -61.7 NC_003521.1 + 78200 0.66 0.777241
Target:  5'- cGCAgGUgGGCCGCUAcUGCC-UGCa -3'
miRNA:   3'- aCGUgCAgCCGGUGGUcGCGGcACGa -5'
13950 5' -61.7 NC_003521.1 + 153410 0.66 0.777241
Target:  5'- gUGCAgGUgcGCCACCGGCGUgGUcaGCa -3'
miRNA:   3'- -ACGUgCAgcCGGUGGUCGCGgCA--CGa -5'
13950 5' -61.7 NC_003521.1 + 140197 0.66 0.768429
Target:  5'- aGCGCuccuggaucUUGGCgGCCgAGuCGCCGUGCa -3'
miRNA:   3'- aCGUGc--------AGCCGgUGG-UC-GCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 61543 0.66 0.768429
Target:  5'- gUGCGCG-CGGCU--CAGCGCCaaGCa -3'
miRNA:   3'- -ACGUGCaGCCGGugGUCGCGGcaCGa -5'
13950 5' -61.7 NC_003521.1 + 130165 0.66 0.768429
Target:  5'- gGCGCG-CGGCCGCCc-CGUCGUcGUc -3'
miRNA:   3'- aCGUGCaGCCGGUGGucGCGGCA-CGa -5'
13950 5' -61.7 NC_003521.1 + 226055 0.66 0.768429
Target:  5'- aGCACcUCGGCCACgAaggcGCGCCccgGCc -3'
miRNA:   3'- aCGUGcAGCCGGUGgU----CGCGGca-CGa -5'
13950 5' -61.7 NC_003521.1 + 157544 0.66 0.768429
Target:  5'- cGUACG-CGGCCGCCGuuGCcCCGgaaagGCg -3'
miRNA:   3'- aCGUGCaGCCGGUGGU--CGcGGCa----CGa -5'
13950 5' -61.7 NC_003521.1 + 153896 0.66 0.768429
Target:  5'- aGCGCG-CGGUaggggaaCAGCGCCGcgUGCa -3'
miRNA:   3'- aCGUGCaGCCGgug----GUCGCGGC--ACGa -5'
13950 5' -61.7 NC_003521.1 + 127854 0.66 0.768429
Target:  5'- aGCcCGUCGGgcagguugcCCACCAggaugcGCGgCGUGCa -3'
miRNA:   3'- aCGuGCAGCC---------GGUGGU------CGCgGCACGa -5'
13950 5' -61.7 NC_003521.1 + 192077 0.66 0.768429
Target:  5'- uUGUgagGCGUCGGCuugugCugCAGCGUCGccgGCg -3'
miRNA:   3'- -ACG---UGCAGCCG-----GugGUCGCGGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 53154 0.66 0.768429
Target:  5'- gGCGCGUaacaguacacgCGGCCGCCcuCGCCGaUGa- -3'
miRNA:   3'- aCGUGCA-----------GCCGGUGGucGCGGC-ACga -5'
13950 5' -61.7 NC_003521.1 + 56788 0.66 0.768429
Target:  5'- uUGCACa-UGGCCGCCcaaccGGCGUCGcGCg -3'
miRNA:   3'- -ACGUGcaGCCGGUGG-----UCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 109900 0.66 0.768429
Target:  5'- gGCGCGggGGUaggaCAGCGUCGUGUUg -3'
miRNA:   3'- aCGUGCagCCGgug-GUCGCGGCACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.