miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 19435 1.06 0.00205
Target:  5'- gUGCACGUCGGCCACCAGCGCCGUGCUc -3'
miRNA:   3'- -ACGUGCAGCCGGUGGUCGCGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 54807 0.73 0.370265
Target:  5'- cGCaACGUCaaaaaGCCGCCgggccccagcGGCGCCGUGCa -3'
miRNA:   3'- aCG-UGCAGc----CGGUGG----------UCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 86498 0.72 0.393609
Target:  5'- cUGCACGUCaaggagcucaaGGCCGCCGGCguGCCGccGCc -3'
miRNA:   3'- -ACGUGCAG-----------CCGGUGGUCG--CGGCa-CGa -5'
13950 5' -61.7 NC_003521.1 + 214012 0.66 0.780733
Target:  5'- -cUACGU-GGCCGCCaccacggccuucugcGGCGCCGUcugGCUg -3'
miRNA:   3'- acGUGCAgCCGGUGG---------------UCGCGGCA---CGA- -5'
13950 5' -61.7 NC_003521.1 + 17608 0.78 0.190142
Target:  5'- gGC-CGUUGGCCACCAGCGCguUGCg -3'
miRNA:   3'- aCGuGCAGCCGGUGGUCGCGgcACGa -5'
13950 5' -61.7 NC_003521.1 + 145186 0.77 0.199269
Target:  5'- cGCGCGacaugaacuccUCGGCCACCGGCauGCCGUGg- -3'
miRNA:   3'- aCGUGC-----------AGCCGGUGGUCG--CGGCACga -5'
13950 5' -61.7 NC_003521.1 + 129494 0.76 0.256489
Target:  5'- cGCGCGU-GGCCAgCGGCGCCGgacUGCc -3'
miRNA:   3'- aCGUGCAgCCGGUgGUCGCGGC---ACGa -5'
13950 5' -61.7 NC_003521.1 + 144556 0.76 0.262309
Target:  5'- aGCGCGUgCGGCagcaGCgAGuCGCCGUGCUc -3'
miRNA:   3'- aCGUGCA-GCCGg---UGgUC-GCGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 60071 0.75 0.280416
Target:  5'- aGCACG-CGGU--CCAGCGCCGUGUc -3'
miRNA:   3'- aCGUGCaGCCGguGGUCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 158234 0.73 0.370265
Target:  5'- gGCgGCGUC-GCUACCAGCGCCGUcGUc -3'
miRNA:   3'- aCG-UGCAGcCGGUGGUCGCGGCA-CGa -5'
13950 5' -61.7 NC_003521.1 + 60595 0.74 0.340642
Target:  5'- cGCAgGUUGGCCggcugcAUCAGCGCCGUcuGCg -3'
miRNA:   3'- aCGUgCAGCCGG------UGGUCGCGGCA--CGa -5'
13950 5' -61.7 NC_003521.1 + 101772 0.75 0.268237
Target:  5'- cUGCugGUCGGCCGCgucuGGcCGCCGcUGCUc -3'
miRNA:   3'- -ACGugCAGCCGGUGg---UC-GCGGC-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 151240 0.82 0.09401
Target:  5'- aGCcgAUGUCGGCCGCCAGCGCCGcgucGCg -3'
miRNA:   3'- aCG--UGCAGCCGGUGGUCGCGGCa---CGa -5'
13950 5' -61.7 NC_003521.1 + 17121 0.73 0.355236
Target:  5'- cGCACGUCGuagacguCCGCCuGCGCCG-GCg -3'
miRNA:   3'- aCGUGCAGCc------GGUGGuCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 103054 0.82 0.09401
Target:  5'- aGCugG-CGGCCGCCGGCGCCGUcaucGCg -3'
miRNA:   3'- aCGugCaGCCGGUGGUCGCGGCA----CGa -5'
13950 5' -61.7 NC_003521.1 + 104459 0.75 0.268237
Target:  5'- aGCACGuaaUCGGCCACgGGCGCgGgGCg -3'
miRNA:   3'- aCGUGC---AGCCGGUGgUCGCGgCaCGa -5'
13950 5' -61.7 NC_003521.1 + 191305 0.73 0.369503
Target:  5'- cUGaGCGUCGGCCagcagacgcuGCCgcccgaauggcugGGCGCCGUGCa -3'
miRNA:   3'- -ACgUGCAGCCGG----------UGG-------------UCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 71327 0.73 0.385722
Target:  5'- aGCaACGUCGGCCcaUGGCGCCGcGCUu -3'
miRNA:   3'- aCG-UGCAGCCGGugGUCGCGGCaCGA- -5'
13950 5' -61.7 NC_003521.1 + 154565 0.81 0.123365
Target:  5'- -cCGCGUCGGCC-CCGGaCGCCGUGCc -3'
miRNA:   3'- acGUGCAGCCGGuGGUC-GCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 128311 0.76 0.23426
Target:  5'- gGCGCGUCGGCCACUucuaccgcgugcGGCGCgagGUGCc -3'
miRNA:   3'- aCGUGCAGCCGGUGG------------UCGCGg--CACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.