miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 120851 0.72 0.4016
Target:  5'- gGCAgGagcCGGCgGCC-GCGCCGUGCa -3'
miRNA:   3'- aCGUgCa--GCCGgUGGuCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 86498 0.72 0.393609
Target:  5'- cUGCACGUCaaggagcucaaGGCCGCCGGCguGCCGccGCc -3'
miRNA:   3'- -ACGUGCAG-----------CCGGUGGUCG--CGGCa-CGa -5'
13950 5' -61.7 NC_003521.1 + 101772 0.75 0.268237
Target:  5'- cUGCugGUCGGCCGCgucuGGcCGCCGcUGCUc -3'
miRNA:   3'- -ACGugCAGCCGGUGg---UC-GCGGC-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 154565 0.81 0.123365
Target:  5'- -cCGCGUCGGCC-CCGGaCGCCGUGCc -3'
miRNA:   3'- acGUGCAGCCGGuGGUC-GCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 200657 0.7 0.523243
Target:  5'- gGC-CGaagCGGCgGCCGGaGCCGUGCa -3'
miRNA:   3'- aCGuGCa--GCCGgUGGUCgCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 222851 0.71 0.469056
Target:  5'- cUGCGCGUUuucauCCGCCAGCGCCucUGCUg -3'
miRNA:   3'- -ACGUGCAGcc---GGUGGUCGCGGc-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 54807 0.73 0.370265
Target:  5'- cGCaACGUCaaaaaGCCGCCgggccccagcGGCGCCGUGCa -3'
miRNA:   3'- aCG-UGCAGc----CGGUGG----------UCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 103054 0.82 0.09401
Target:  5'- aGCugG-CGGCCGCCGGCGCCGUcaucGCg -3'
miRNA:   3'- aCGugCaGCCGGUGGUCGCGGCA----CGa -5'
13950 5' -61.7 NC_003521.1 + 115659 0.71 0.451633
Target:  5'- gGC-CGUggCGGCCGCCcGCGCCcUGCa -3'
miRNA:   3'- aCGuGCA--GCCGGUGGuCGCGGcACGa -5'
13950 5' -61.7 NC_003521.1 + 151240 0.82 0.09401
Target:  5'- aGCcgAUGUCGGCCGCCAGCGCCGcgucGCg -3'
miRNA:   3'- aCG--UGCAGCCGGUGGUCGCGGCa---CGa -5'
13950 5' -61.7 NC_003521.1 + 71327 0.73 0.385722
Target:  5'- aGCaACGUCGGCCcaUGGCGCCGcGCUu -3'
miRNA:   3'- aCG-UGCAGCCGGugGUCGCGGCaCGA- -5'
13950 5' -61.7 NC_003521.1 + 137504 0.72 0.409694
Target:  5'- cGC-CGUCGGCC-CCGGC-CgGUGCg -3'
miRNA:   3'- aCGuGCAGCCGGuGGUCGcGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 17121 0.73 0.355236
Target:  5'- cGCACGUCGuagacguCCGCCuGCGCCG-GCg -3'
miRNA:   3'- aCGUGCAGCc------GGUGGuCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 60071 0.75 0.280416
Target:  5'- aGCACG-CGGU--CCAGCGCCGUGUc -3'
miRNA:   3'- aCGUGCaGCCGguGGUCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 129494 0.76 0.256489
Target:  5'- cGCGCGU-GGCCAgCGGCGCCGgacUGCc -3'
miRNA:   3'- aCGUGCAgCCGGUgGUCGCGGC---ACGa -5'
13950 5' -61.7 NC_003521.1 + 17608 0.78 0.190142
Target:  5'- gGC-CGUUGGCCACCAGCGCguUGCg -3'
miRNA:   3'- aCGuGCAGCCGGUGGUCGCGgcACGa -5'
13950 5' -61.7 NC_003521.1 + 144439 0.7 0.532517
Target:  5'- aGCGCG-CGGCaGgCGGCGCCG-GCg -3'
miRNA:   3'- aCGUGCaGCCGgUgGUCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 239486 0.7 0.532517
Target:  5'- aGCGCcacauCCACCAGCGCCuGUGCUg -3'
miRNA:   3'- aCGUGcagccGGUGGUCGCGG-CACGA- -5'
13950 5' -61.7 NC_003521.1 + 148710 0.7 0.504888
Target:  5'- aGCACGcacCGGCCACCccuggAGCcGCCG-GCg -3'
miRNA:   3'- aCGUGCa--GCCGGUGG-----UCG-CGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 143802 0.71 0.469056
Target:  5'- cUGCuCGUC-GCCGgCGGCGCgCGUGCg -3'
miRNA:   3'- -ACGuGCAGcCGGUgGUCGCG-GCACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.