miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 189974 0.66 0.986928
Target:  5'- gGAccCGUcCACCUUCUCAaaaaGCCGCcGUCa -3'
miRNA:   3'- aCU--GCAaGUGGGAGGGU----UGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 32795 0.66 0.985291
Target:  5'- aGACccgCGCCCUCCagcauACgGCGGUCc -3'
miRNA:   3'- aCUGcaaGUGGGAGGgu---UGgCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 83771 0.66 0.985291
Target:  5'- gUGGCGg-CGCCC-CCC-GCCGCGcUCc -3'
miRNA:   3'- -ACUGCaaGUGGGaGGGuUGGCGUuAG- -5'
13951 3' -53.3 NC_003521.1 + 64991 0.66 0.985291
Target:  5'- cGACGUgCGCCgCUUCUugGACCGCGc-- -3'
miRNA:   3'- aCUGCAaGUGG-GAGGG--UUGGCGUuag -5'
13951 3' -53.3 NC_003521.1 + 150911 0.66 0.986452
Target:  5'- cGACuGcgCGCCCUUCCAcggcgugugggccgAgCGCGGUCa -3'
miRNA:   3'- aCUG-CaaGUGGGAGGGU--------------UgGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 13162 0.66 0.986928
Target:  5'- gUGuACGUcUCAggaCCUCCCGgacgGCCGCuGUCa -3'
miRNA:   3'- -AC-UGCA-AGUg--GGAGGGU----UGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 141082 0.66 0.986928
Target:  5'- cGACGUggagGCCCUCCUguGGCUGCu--- -3'
miRNA:   3'- aCUGCAag--UGGGAGGG--UUGGCGuuag -5'
13951 3' -53.3 NC_003521.1 + 238402 0.66 0.988277
Target:  5'- gGGCGUcCcagcgggGCCgCUCCCAguGCuCGCGGUCg -3'
miRNA:   3'- aCUGCAaG-------UGG-GAGGGU--UG-GCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 196372 0.66 0.98842
Target:  5'- gUGGCGUUgUACUCgcaucgCCgAGCCGCcGUCa -3'
miRNA:   3'- -ACUGCAA-GUGGGa-----GGgUUGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 27381 0.66 0.992117
Target:  5'- aUGGaGUUCGCCCgcaCCGGCCuGCGcgccGUCg -3'
miRNA:   3'- -ACUgCAAGUGGGag-GGUUGG-CGU----UAG- -5'
13951 3' -53.3 NC_003521.1 + 27837 0.66 0.992117
Target:  5'- gGACGUg--UUCgUCCAGCCGCGGUCu -3'
miRNA:   3'- aCUGCAaguGGGaGGGUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 12238 0.66 0.989778
Target:  5'- cGACGgcagaccUCACUCUCgcugCCgAGCUGCAGUCc -3'
miRNA:   3'- aCUGCa------AGUGGGAG----GG-UUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 179966 0.66 0.988979
Target:  5'- aUGACGUucugggggucuuuguUCAUgCUCUCGcggGCCGCcGUCg -3'
miRNA:   3'- -ACUGCA---------------AGUGgGAGGGU---UGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 116210 0.66 0.98842
Target:  5'- aGACG-UCGCCgUCgCCG-CCGCuucGUCg -3'
miRNA:   3'- aCUGCaAGUGGgAG-GGUuGGCGu--UAG- -5'
13951 3' -53.3 NC_003521.1 + 21132 0.66 0.986928
Target:  5'- cGACGaccCGCCagagaUCCCAgaguACCgGCAGUCg -3'
miRNA:   3'- aCUGCaa-GUGGg----AGGGU----UGG-CGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 66601 0.66 0.989778
Target:  5'- cGACGcgC-CCCUgCCCGACCcGCGc-- -3'
miRNA:   3'- aCUGCaaGuGGGA-GGGUUGG-CGUuag -5'
13951 3' -53.3 NC_003521.1 + 117251 0.66 0.992117
Target:  5'- cGGCGccgcCGCCaUCCCGccACCGCcGUCg -3'
miRNA:   3'- aCUGCaa--GUGGgAGGGU--UGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 118902 0.66 0.991007
Target:  5'- aUGAgGUccUCGCCCUCgUCGgcGCCGCGGc- -3'
miRNA:   3'- -ACUgCA--AGUGGGAG-GGU--UGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 26112 0.66 0.985291
Target:  5'- cGugGUUCGCgucuCCgugUCCCAACUGUAcgCc -3'
miRNA:   3'- aCugCAAGUG----GG---AGGGUUGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 108534 0.66 0.989778
Target:  5'- cGACGgcgaccuggUCACCCggacCCUGGCCGUAu-- -3'
miRNA:   3'- aCUGCa--------AGUGGGa---GGGUUGGCGUuag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.