Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13951 | 3' | -53.3 | NC_003521.1 | + | 189974 | 0.66 | 0.986928 |
Target: 5'- gGAccCGUcCACCUUCUCAaaaaGCCGCcGUCa -3' miRNA: 3'- aCU--GCAaGUGGGAGGGU----UGGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 32795 | 0.66 | 0.985291 |
Target: 5'- aGACccgCGCCCUCCagcauACgGCGGUCc -3' miRNA: 3'- aCUGcaaGUGGGAGGgu---UGgCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 83771 | 0.66 | 0.985291 |
Target: 5'- gUGGCGg-CGCCC-CCC-GCCGCGcUCc -3' miRNA: 3'- -ACUGCaaGUGGGaGGGuUGGCGUuAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 64991 | 0.66 | 0.985291 |
Target: 5'- cGACGUgCGCCgCUUCUugGACCGCGc-- -3' miRNA: 3'- aCUGCAaGUGG-GAGGG--UUGGCGUuag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 150911 | 0.66 | 0.986452 |
Target: 5'- cGACuGcgCGCCCUUCCAcggcgugugggccgAgCGCGGUCa -3' miRNA: 3'- aCUG-CaaGUGGGAGGGU--------------UgGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 13162 | 0.66 | 0.986928 |
Target: 5'- gUGuACGUcUCAggaCCUCCCGgacgGCCGCuGUCa -3' miRNA: 3'- -AC-UGCA-AGUg--GGAGGGU----UGGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 141082 | 0.66 | 0.986928 |
Target: 5'- cGACGUggagGCCCUCCUguGGCUGCu--- -3' miRNA: 3'- aCUGCAag--UGGGAGGG--UUGGCGuuag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 238402 | 0.66 | 0.988277 |
Target: 5'- gGGCGUcCcagcgggGCCgCUCCCAguGCuCGCGGUCg -3' miRNA: 3'- aCUGCAaG-------UGG-GAGGGU--UG-GCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 196372 | 0.66 | 0.98842 |
Target: 5'- gUGGCGUUgUACUCgcaucgCCgAGCCGCcGUCa -3' miRNA: 3'- -ACUGCAA-GUGGGa-----GGgUUGGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 27381 | 0.66 | 0.992117 |
Target: 5'- aUGGaGUUCGCCCgcaCCGGCCuGCGcgccGUCg -3' miRNA: 3'- -ACUgCAAGUGGGag-GGUUGG-CGU----UAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 27837 | 0.66 | 0.992117 |
Target: 5'- gGACGUg--UUCgUCCAGCCGCGGUCu -3' miRNA: 3'- aCUGCAaguGGGaGGGUUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 12238 | 0.66 | 0.989778 |
Target: 5'- cGACGgcagaccUCACUCUCgcugCCgAGCUGCAGUCc -3' miRNA: 3'- aCUGCa------AGUGGGAG----GG-UUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 179966 | 0.66 | 0.988979 |
Target: 5'- aUGACGUucugggggucuuuguUCAUgCUCUCGcggGCCGCcGUCg -3' miRNA: 3'- -ACUGCA---------------AGUGgGAGGGU---UGGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 116210 | 0.66 | 0.98842 |
Target: 5'- aGACG-UCGCCgUCgCCG-CCGCuucGUCg -3' miRNA: 3'- aCUGCaAGUGGgAG-GGUuGGCGu--UAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 21132 | 0.66 | 0.986928 |
Target: 5'- cGACGaccCGCCagagaUCCCAgaguACCgGCAGUCg -3' miRNA: 3'- aCUGCaa-GUGGg----AGGGU----UGG-CGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 66601 | 0.66 | 0.989778 |
Target: 5'- cGACGcgC-CCCUgCCCGACCcGCGc-- -3' miRNA: 3'- aCUGCaaGuGGGA-GGGUUGG-CGUuag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 117251 | 0.66 | 0.992117 |
Target: 5'- cGGCGccgcCGCCaUCCCGccACCGCcGUCg -3' miRNA: 3'- aCUGCaa--GUGGgAGGGU--UGGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 118902 | 0.66 | 0.991007 |
Target: 5'- aUGAgGUccUCGCCCUCgUCGgcGCCGCGGc- -3' miRNA: 3'- -ACUgCA--AGUGGGAG-GGU--UGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 26112 | 0.66 | 0.985291 |
Target: 5'- cGugGUUCGCgucuCCgugUCCCAACUGUAcgCc -3' miRNA: 3'- aCugCAAGUG----GG---AGGGUUGGCGUuaG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 108534 | 0.66 | 0.989778 |
Target: 5'- cGACGgcgaccuggUCACCCggacCCUGGCCGUAu-- -3' miRNA: 3'- aCUGCa--------AGUGGGa---GGGUUGGCGUuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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